SJ. Skeletal muscle type comparison of pyruvate dehydrogenase phosphatase activity and isoform expression: effects of obesity and endurance training. Am J Physiol Regul Integr Comp Physiol 295: R1224 -R1230, 2008. First published August 20, 2008 doi:10.1152/ajpregu.90320.2008.-Pyruvate dehydrogenase (PDH) plays an important role in regulating carbohydrate metabolism in skeletal muscle. PDH is activated by PDH phosphatase (PDP) and deactivated by PDH kinase (PDK). Obesity has a large negative impact on skeletal muscle carbohydrate metabolism, whereas endurance training has been shown to improve regulatory control of skeletal muscle carbohydrate metabolism, more so when coupled with obesity. A majority of this literature has focused on PDK, with little information available on PDP. To determine the relative role of PDP in regulating skeletal muscle PDH activity with obesity and endurance training, obese and lean Zucker rats remained sedentary or were endurance trained (1 h/day, 5 days/wk) for a period of 8 wk. Soleus, red gastrocnemius, (RG), and white gastrocnemius (WG) muscles were sampled after the training period. The main findings were 1) obesity resulted in a 46% decrease in PDP activity expressed per milligram extracted mitochondrial protein only in RG, while PDP isoform content was unchanged; 2) 8 wk of endurance training led to a significant 1.4 -2.2-fold increase in PDP activity of all muscle examined from obese rats, and the concomitant increase in PDP1 protein was only seen in soleus and RG; 3) 8 wk of endurance training led to a trending 1.4 -2.2-fold increase in PDP activity of all muscle examined from obese rats, and the concomitant increase in PDP1 protein was only seen in soleus and RG; and 4) PDP2 protein content was not affected by obesity or training. These results suggest that decreased PDP activity in oxidative skeletal muscles may play a role in the impairment of carbohydrate metabolism in obese rats, which is reversible with endurance training. PDP1 and 2; carbohydrate oxidation; exercise PYRUVATE DEHYDROGENASE (PDH) is a key component to glucose homeostasis, as it is the first nonreversible step in mitochondrial glucose oxidation. It is a complex enzyme with many copies of the catalytic subunits and proteins (E1␣, E1, E2, E3, and E3 binding protein), as well as its associated regulatory kinase and phophatase enzymes. Decreased carbohydrate flux through PDH is mediated through its phosphorylation and deactivation via PDH kinase (PDK; as reviewed by Refs. 7 and 42). The activation of PDH, via dephosphorylation by PDH phosphatase (PDP), promotes carbohydrate oxidation. The complexity of PDH control by PDK and PDP is enhanced by the presence of multiple isoforms, four PDK [PDK1-4 (4)] and two PDP [PDP1 and 2 (18)]. The two PDP isoforms are unique in their skeletal muscle type distribution and allosteric regulators. PDP1 is the predominant isoform expressed in skeletal muscle, with ϳ2.5 times more found in red gastrocnemius (RG) compared with soleus and white gastrocnemius [WG; (26)] and is ...