In this article, we have compared the anions of sodium salts (Is) and ionic liquids (ILs) with the stability and structure of αchymotrypsin (CT), through fluorescence, thermal fluorescence 10 analysis and circular dichroism (CD) spectroscopy. The experimental results revealed that the Hofmeister series of anions such as SCN‾, SO 4 2¯, Cl‾, Br‾, CH 3 COO‾ and I‾ of Is destabilized the native structure of the CT. On the contrary, the anions such as CH 3 COO‾, Cl‾ and Br‾ of imidazolium-based IL with fixed cation 15 such as 1-butyl-3-methylimidazolium, [Bmim] + stabilized the native structure of the CT. The remaining anions of ILs such as SCN‾, HSO 4 ‾, and I‾ acted as denaturing agents for the native structure of CT. Furthermore, molecular docking results show that the imidazolium-cation of the IL enters the sub-domains of 20 the CT and interacts with the ionic residues of the CT, that is Ser217 close to Trp215. This interaction is in well agreement with the fluorescence quenching observed for CT in the presence of [Bmim] + . On the other hand, the destabilizing anion such as SO 4 2¯w as observed to be directly interacting with Ser195 in the 25 active site of the CT. We have observed that the Hofmeister series effects of anions of either Is or ILs are entirely based on the interaction of the anions with its counterion, that is the cation, with solvent molecules, as well as with the protein surface. Evidently, these interactions vary with co-solvent system and the 30 type of the protein. Hence, the stability of a biomolecule in the presence of the anions may or may not obey Hofmeister series. 65 80