2006
DOI: 10.1007/s10327-006-0277-9
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DNA transposon fossils present on the conditionally dispensable chromosome controlling AF-toxin biosynthesis and pathogenicity of Alternaria alternata

Abstract: copies of TLS-S1, TLS-S2, and TLS-S3, respectively, and a single copy of TLS-S5 on the CD chromosome were estimated by DNA gel blot analysis. The remaining copy of TLS-S1 and the three copies of TLS-S2 were isolated and identified to also encode incomplete ORFs.Thus, it appears that all copies of the transposon-like sequences identified are inactivated elements (fossils) unique to the CD chromosome in the genome of the strawberry pathotype.

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Cited by 19 publications
(13 citation statements)
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References 53 publications
(93 reference statements)
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“…Host‐selective toxin biosynthetic genes have been isolated from six pathotypes of A. alternata (Tsuge et al ., ).The gene clusters of A. alternata have unique features, such as the presence of multiple sets of clusters on a single chromosome, high‐density distribution of transposon‐like sequences in the clusters and storage of the clusters in single small chromosomes of <2.0 Mb in most strains tested (Tanaka et al ., ; Tanaka & Tsuge, ; Johnson et al ., ; Hatta et al ., , ; Masunaka et al ., ; Ruswandi et al ., ; Harimoto et al ., , ; Miyamoto et al ., , , ; Akagi et al ., ; Izumi et al ., ). Loss of the small chromosomes encoding toxin biosynthetic gene clusters was observed in the strawberry, apple and tomato pathotypes, and the small chromosomes appeared to be conditionally dispensable (CD) (Covert, ; Johnson et al ., ; Hatta et al ., ; Akagi et al ., ).…”
Section: Discussionmentioning
confidence: 97%
“…Host‐selective toxin biosynthetic genes have been isolated from six pathotypes of A. alternata (Tsuge et al ., ).The gene clusters of A. alternata have unique features, such as the presence of multiple sets of clusters on a single chromosome, high‐density distribution of transposon‐like sequences in the clusters and storage of the clusters in single small chromosomes of <2.0 Mb in most strains tested (Tanaka et al ., ; Tanaka & Tsuge, ; Johnson et al ., ; Hatta et al ., , ; Masunaka et al ., ; Ruswandi et al ., ; Harimoto et al ., , ; Miyamoto et al ., , , ; Akagi et al ., ; Izumi et al ., ). Loss of the small chromosomes encoding toxin biosynthetic gene clusters was observed in the strawberry, apple and tomato pathotypes, and the small chromosomes appeared to be conditionally dispensable (CD) (Covert, ; Johnson et al ., ; Hatta et al ., ; Akagi et al ., ).…”
Section: Discussionmentioning
confidence: 97%
“…Toxin biosynthetic genes appeared to be clustered on small chromosomes of \2.0 Mb in most strains of these pathotypes tested (Akamatsu et al 1999;Johnson et al 2001;Hatta et al 2002;Ito et al 2004;Akagi et al 2005;Masunaka et al 2005;Hatta et al 2006;Harimoto et al 2007). We identified that small chromosomes encoding toxin biosynthetic genes from the strawberry and tomato pathotypes are also CD chromosomes (Hatta et al 2002;Akagi et al 2005).…”
Section: Discussionmentioning
confidence: 75%
“…Strains from the Japanese pear and tangerine pathotypes showed the presence of the TLS-S2 copies, whereas it could not be detected in other pathotypes or in the nonpathogenic strain ( Fig. 2.5) (Hatta et al 2006). Some fungal pathogens have been reported to produce nonspecific phytotoxic compounds that have different actions on host plant tissues.…”
Section: Toxins Produced By Fungal Pathogensmentioning
confidence: 97%
“…Left: Pathotypes of strains: S-strawberry; Right: Jp, Japanese pear; Ta, tangerine; R, rough lemon; A, apple; Tm, tomato; Tb, tobacco; Np, nonpathogen. (Courtesy ofHatta et al 2006; The Phytopathological Society of Japan and Springer-Verlag, Tokyo)…”
mentioning
confidence: 99%