Hydroxyurea, a well-known DNA replication inhibitor, induces cell cycle arrest and intact checkpoint functions are required to survive DNA replication stress induced by this genotoxic agent. Perturbed DNA synthesis also results in elevated levels of DNA damage. It is unclear how organisms prevent accumulation of this type of DNA damage that coincides with hampered DNA synthesis. Here, we report the identification of stonewall (stwl) as a novel hydroxyureahypersensitive mutant. We demonstrate that Stwl is required to prevent accumulation of DNA damage induced by hydroxyurea; yet, Stwl is not involved in S/M checkpoint regulation. We show that Stwl is a heterochromatin-associated protein with transcription-repressing capacities. In stwl mutants, levels of trimethylated H3K27 and H3K9 (two hallmarks of silent chromatin) are decreased. Our data provide evidence for a Stwl-dependent epigenetic mechanism that is involved in the maintenance of the normal balance between euchromatin and heterochromatin and that is required to prevent accumulation of DNA damage in the presence of DNA replication stress.
INTRODUCTIONCell cycle checkpoint pathways and DNA damage response pathways are essential mechanisms that control the order and timing of all cell cycle transitions and that ensure that critical events such as DNA replication and chromosome segregation are performed with high fidelity (Hartwell and Weinert, 1989;Elledge, 1996;Hurley and Bunz, 2007). In case these mechanisms fail, genetic abnormalities could be passed on to the following generations of cells, and this could lead to genomic instability and diseases such as cancer (Dasika et al., 1999;Houtgraaf et al., 2006). Cell cycle checkpoint and DNA repair genes have initially been identified using forward genetic screens in budding yeast (Saccharomyces cerevisiae) and fission yeast (Schizosaccharomyces pombe) (reviewed in O'Connell et al., 2000;Carr, 2002). Subsequently, forward genetic screens were also performed in Drosophila melanogaster and resulted in the identification of Ͼ30 mutagen-hypersensitive (mus) genes (Boyd et al., 1976(Boyd et al., , 1981Henderson et al., 1987). Several of these mus genes have been cloned, and their function has been assigned to checkpoint regulation or DNA damage repair (Harris et al., 1996;Oshige et al., 1999;Brodsky et al., 2000;Yamamoto et al., 2000). More recently, using additional screens or by comparing Drosophila homologues with other species (Sibon et al., 1997(Sibon et al., , 1999Price et al., 2000;LaRocque et al., 2007;McVey et al., 2007;Wei and Rong, 2007;Klovstad et al., 2008), several other genes were identified that are implicated in proper cell cycle checkpoint function or DNA damage repair. Although discrepancies in survival pathways among different organisms do exist, it can be concluded that many genes involved in responses to DNA damage, and their pathways, are highly conserved (Henderson, 1999;Rhind and Russell, 2000;Sekelsky et al., 2000).Hydroxyurea (HU) is a compound that inhibits ribonucleoside dephosphate redu...