Prior studies, which have relied upon the use of pseudovirions generated in heterologous cell types, have led to sometimes conflicting conclusions regarding the role of the minor capsid protein of papillomaviruses, L2, in the viral life cycle. In this study we carry out analyses with true virus particles assembled in the natural host cell to assess L2's role in the viral infectious life cycle. For these studies we used the organotypic (raft) culture system to recapitulate the full viral life cycle of the high-risk human papillomavirus HPV31, which was either wild type or mutant for L2. After transfection, the L2 mutant HPV31 genome was able to establish itself as a nuclear plasmid in proliferating populations of poorly differentiated (basal-like) human keratinocytes and to amplify its genome to high copy number, support late viral gene expression, and cause formation of virus particles in human keratinocytes that had been induced to undergo terminal differentiation. These results indicate that aspects of both the nonproductive and productive phases of the viral life cycle occur normally in the absence of functional L2. However, upon the analysis of the virus particles generated, we found an approximate 10-fold reduction in the amount of viral DNA encapsidated into L2-deficient virions. Furthermore, there was an over-100-fold reduction in the infectivity of L2-deficient virus. Because the latter deficiency cannot be accounted for solely by the 10-fold decrease in encapsidation, we conclude that L2 contributes to at least two steps in the production of infectious virus.Papillomaviruses are small icosahedral viruses with doublestranded, circular DNA genomes that infect the stratified squamous epithelial tissues of vertebrates. The infection commonly results in a papilloma, or wart, formation. A small subset of the human-specific genotypes termed the high-risk human papillomaviruses (HPVs), including HPV31, have the capacity to cause cancer, most notably cervical cancer (35). Understanding the papillomaviral life cycle may allow us to establish the means to inhibit high-risk papillomaviral infections and thereby prevent HPV-associated cancers. In this study, we investigated the role the minor capsid protein, L2, plays in the papillomaviral life cycle.The life cycle of papillomaviruses is intricately tied to the differentiation of their host tissue, stratified squamous epithelium (23). In the poorly differentiated basal cells, which comprise the proliferating compartment of the epithelium and where papillomaviral infection is thought to arise, the viral genome takes up residence as a stable, nuclear plasmid that is maintained at low copy number. Only a subset of viral genes, the early genes, is selectively expressed in the basal compartment, and therefore no new virus is made there. Consequently, we refer to the infective state in the basal compartment as the nonproductive phase of the life cycle. As basal cells proliferate and undergo cell division, daughter cells that lose contact with the underlying basement membr...