Abstract:Background and Aims
Psidium is the 4th largest genus of Myrtaceae in the Neotropics. Psidium guajava is widely cultivated in the tropics for its edible fruit. It is commercially under threat due to the disease guava decline. P. cattleyanum is one of the 100 most invasive organisms in the world. Knowledge of the phylogenetic relationships within Psidium is poor. We aim to provide a review of the biology, morphology and ecology of Psidium, a phylogenetic tree, an infra-generic classification an… Show more
“…The neotropical and monophyletic genus Psidium , family Myrtaceae, contains approximately 92 species 1 , hich are taxonomically classified in four sections: Psidium (10 species), Obversifolia (six species), Apertiflora (31 species) and Mitranthes (26 species) 2 . ~ 60 Psidium species occur in Brazil distributed in all biomes, in several phytogeographic domains, representing great diversification 3 .…”
Section: Introductionmentioning
confidence: 99%
“…Psidium guajava L. (guava tree, Psidium section) is the well-known species of the genus due to its relevance for fruit production 4 and medicinal value 5 , 6 . Other Psidium species, popularly called “araçás”, are potential genetic resources for breeding programs and medicinal purposes 7 , as well as they are relevant for taxonomic, ecological and evolutive studies in this genus 2 .…”
Diploid and polyploid species derived from the euploid series x = 11 occur in the genus Psidium, as well as intraspecific cytotypes. Euploidy in the genus can alter the gene copy number, resulting in several “omics” variations. We revisited the euploidy, reported genomic (nuclear 2C value, GC%, and copy number of secondary metabolism genes) and epigenomic (5-mC%) differences in Psidium, and related them to essential oil yield and composition. Mean 2C values ranged from 0.90 pg (P. guajava) to 7.40 pg (P. gaudichaudianum). 2C value is intraspecifically varied in P. cattleyanum and P. gaudichaudianum, evidencing cytotypes that can be formed from euploid (non-reduced) and/or aneuploid reproductive cells. GC% ranged from 34.33% (P. guineense) to 48.95% (P. myrtoides), and intraspecific variations occurred even for species without 2C value intraspecific variation. Essential oil yield increased in relation to 2C value and to GC%. We showed that P. guajava (diploid) possesses two and P. guineense (tetraploid) four copies of the one specific TPS gene, as well as eight and sixteen copies respectively of the conserved regions that occur in eight TPS genes. We provide a wide “omics'' characterization of Psidium and show the outcome of the genome and epigenome variation in secondary metabolism.
“…The neotropical and monophyletic genus Psidium , family Myrtaceae, contains approximately 92 species 1 , hich are taxonomically classified in four sections: Psidium (10 species), Obversifolia (six species), Apertiflora (31 species) and Mitranthes (26 species) 2 . ~ 60 Psidium species occur in Brazil distributed in all biomes, in several phytogeographic domains, representing great diversification 3 .…”
Section: Introductionmentioning
confidence: 99%
“…Psidium guajava L. (guava tree, Psidium section) is the well-known species of the genus due to its relevance for fruit production 4 and medicinal value 5 , 6 . Other Psidium species, popularly called “araçás”, are potential genetic resources for breeding programs and medicinal purposes 7 , as well as they are relevant for taxonomic, ecological and evolutive studies in this genus 2 .…”
Diploid and polyploid species derived from the euploid series x = 11 occur in the genus Psidium, as well as intraspecific cytotypes. Euploidy in the genus can alter the gene copy number, resulting in several “omics” variations. We revisited the euploidy, reported genomic (nuclear 2C value, GC%, and copy number of secondary metabolism genes) and epigenomic (5-mC%) differences in Psidium, and related them to essential oil yield and composition. Mean 2C values ranged from 0.90 pg (P. guajava) to 7.40 pg (P. gaudichaudianum). 2C value is intraspecifically varied in P. cattleyanum and P. gaudichaudianum, evidencing cytotypes that can be formed from euploid (non-reduced) and/or aneuploid reproductive cells. GC% ranged from 34.33% (P. guineense) to 48.95% (P. myrtoides), and intraspecific variations occurred even for species without 2C value intraspecific variation. Essential oil yield increased in relation to 2C value and to GC%. We showed that P. guajava (diploid) possesses two and P. guineense (tetraploid) four copies of the one specific TPS gene, as well as eight and sixteen copies respectively of the conserved regions that occur in eight TPS genes. We provide a wide “omics'' characterization of Psidium and show the outcome of the genome and epigenome variation in secondary metabolism.
PremiseIncreasingly complete phylogenies underpin studies in systematics, ecology, and evolution. Myrteae (Myrtaceae), with ~2700 species, is a key component of the exceptionally diverse Neotropical flora, but given its complicated taxonomy, automated assembling of molecular supermatrices from public databases often lead to unreliable topologies due to poor species identification.MethodsHere, we build a taxonomically verified molecular supermatrix of Neotropical Myrteae by assembling 3909 published and 1004 unpublished sequences from two nuclear and seven plastid molecular markers. We infer a time‐calibrated phylogenetic tree that covers 712 species of Myrteae (~28% of the total diversity in the clade) and evaluate geographic and taxonomic gaps in sampling.ResultsThe tree inferred from the fully concatenated matrix mostly reflects the topology of the plastid data set and there is a moderate to strong incongruence between trees inferred from nuclear and plastid partitions. Large, species‐rich genera are still the poorest sampled within the group. Eastern South America is the best‐represented area in proportion to its species diversity, while Western Amazon, Mesoamerica, and the Caribbean are the least represented.ConclusionsWe provide a time‐calibrated tree that can be more reliably used to address finer‐scale eco‐evolutionary questions that involve this group in the Neotropics. Gaps to be filled by future studies include improving representation of taxa and areas that remain poorly sampled, investigating causes of conflict between nuclear and plastid partitions, and the role of hybridization and incomplete lineage sorting in relationships that are poorly supported.
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