“…The development of high‐throughput DNA sequencing technologies, which enable cost effective mass sequencing of targeted, amplified DNA regions, allows profiling of microbial communities in environmental samples at an unprecedented depth and has, accordingly, led to a resurgence in microbial ecology studies (Hibbett, Ohman, & Kirk, ; Margulies et al., ; Sogin et al., ). The proliferation of studies in this field in recent years has enhanced our understanding of the structure and function of microbial communities, for example how their taxonomic composition varies along ecological gradients (e.g., Jonsson et al., ; Pellissier et al., ; Yao, Vik, Brysting, Carlsen, & Halvorsen, ), among forest types (e.g., Davey, Kauserud, & Ohlson, ), among soils with different availability of nutrients and substrate types (e.g., Davey et al., ) and among different host species (e.g., Botnen et al., ; Morris, Pérez‐Pérez, Smith, Bledsoe, & Perez‐Perez, ; Nissinen, Männistö, & van Elsas, ). For a majority of ecosystems, however, we still lack knowledge about the structure and basic properties of microbial communities, such as the relative importance of biotic factors vs. environment as determinants of the species composition.…”