Whether introduced species invasions pose a major threat to biodiversity is hotly debated. Much of this debate is fueled by recent findings that competition from introduced organisms has driven remarkably few plant species to extinction. Instead, native plant species in invaded ecosystems are often found in refugia: patchy, marginal habitats unsuitable to their nonnative competitors. However, whether the colonization and extinction dynamics of these refugia allow long-term native persistence is uncertain. Of particular concern is the possibility that invasive plants may induce an extinction debt in the native flora, where persistence over the short term masks deterministic extinction trajectories. We examined how invader impacts on landscape structure influence native plant persistence by combining recently developed quantitative techniques for evaluating metapopulation persistence with field measurements of an invaded plant community. We found that European grass invasion of an edaphically heterogeneous California landscape has greatly decreased the likelihood of the persistence of native metapopulations. It does so via two main pathways: (i) decreasing the size of native refugia, which reduces seed production and increases local extinction, and (ii) eroding the dispersal permeability of the matrix between refugia, which reduces their connectivity. Even when native plant extinction is the deterministic outcome of invasion, the time to extinction can be on the order of hundreds of years. We conclude that the relatively short time since invasion in many parts of the world is insufficient to observe the full impact of plant invasions on native biodiversity. metacommunity | metapopulation | invasive species | spatial ecology | temporal lag I ntroduced species are often considered a leading threat to native biodiversity (1, 2). However, recent syntheses show that competition from introduced species, and plant invaders in particular, has only rarely resulted in extinction (3-6). This trend has emerged because, in the short term at least, invasive plants do not completely extirpate native plant species but rather reduce their distribution and abundance, often restricting them to isolated habitat refugia (7-9). Despite well-established cases of native plants occupying distinct refugia and outperforming invasive plant species in those habitats (8, 10, 11), the long-term dynamics of native species in these refugia are poorly understood. Given the global prevalence of plant displacement by invasions, it is important to develop a general method for predicting how extinction debts may develop following invasions.The metapopulation framework, which considers a network of isolated populations connected via dispersal, provides an excellent starting point for understanding the long-term consequences of invasions. When native populations are relegated to spatially isolated refugia, their long-term persistence is regulated by the colonization and extinction dynamics in their entire metapopulation (12). A large body of work sugges...