As in maize [Wright, A. D (5) and, recently, for Arabidopsis thaliana (6), are not yet known. A. thaliana lends itself particularly to the study of IAA biosynthesis because of the availability of several mutants in the tryptophan biosynthetic pathway (6-8). From precursor feeding experiments using the A. thaliana trp2-1 (tryptophan synthase (3 deficient) and trp3-1 (tryptophan synthase a deficient) mutants, Normanly et al. (6) showed recently that anthranilate, but not L-tryptophan, was a major precursor to IAA. The pool of endogenous indole-3-acetonitrile (IAN) as well as that of IAA was increased in these mutants, and IAN carried label from anthranilate, as expected for the IAA precursor (6). Minor contributions to the pool of IAA from tryptophan via the indoleacetaldoxime pathway proposed earlier (9) could not be excluded completely in this study (6). IAN is also a proposed intermediate in this pathway. A third route to IAA may lead from myrosinase-catalyzed degradation ofindole-3-methyl glucosinolate (glucobrassicin) via IAN to the auxin, but this pathway may occur only at specific stages in plant development (10). Glucobrassicin is a major glucosinolate in A. thaliana, especially in the seeds (11).These data suggest multiple pathways to IAA in A. thaliana, all involving IAN as the direct auxin precursor. Nitrilase (nitrile aminohydrolase, EC 3.5.5.1) must thus be regarded as the key enzyme in the biosynthesis ofIAA in this species. Nitrilase I has been cloned in our laboratory (12), but Southern hybridizations showed the presence of a second nitrilase gene in this plant. We have now cloned and functionally expressed a cDNA encoding this second enzyme, and we show that the two nitrilases, while similar in their enzymatic properties, are localized in different intracellular compartments and that their expression is differentially regulated during plant development.