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Functional Divergence after Gene (Domain) DuplicationGene duplication has long been thought to be a primary source of material for the origin of functional novelties Sidow 1996). Similarly, domain shuffling (or domain duplication) is proposed to be a major evolutionary force to generate multidomain proteins (Henikoff et al. 1997). In theory, gene duplication or/and domain shuffling events resulted in gene families and supergene families, in which several paralogous genes with sequence similarity employ related but distinct functions (Lundin 1993; Hughes 1994; Spring 1996). Under a conventional model, after gene (domain) Irving et al, 2001). However, since they are usually based on some empirical rules rather than a statistical model, the reliability of predictions needs to be justified or at least just made explicit.
Structural Basis of Functional Divergence after Gene (Domain) DuplicationIn the post-genomic era, one can expect more and more 3D structures of proteins will be determined due to high throughput structure determination approaches. In many cases, two homologous proteins with related but distinct functions have very similar 3D structures. On the other hand, several studies have shown that some residue changes that have dramatic consequences in physiology are not structurally important sites. It is interesting to investigate the interrelationship between functional divergence, protein structure and molecular evolution. Indeed, many amino acid changes caused by stochastic process are not related to functional divergence and thus do not result in structure changes. analysis provides a useful tool to build up a genome-level hierarchy of gene families.One of the objectives of this study is to explore the evolutionary patterns in more than 2000 vertebrate gene families and to shed a light on the mecha...