To evaluate whether the capacity of interlayer sites affects the dynamics of fixed ammonium (NH 4 + ) in a paddy soil, a combination of potassium (K)-saturation treatment and stepwise extraction of nonexchangeable K with 0.01 mol L −1 hydrochloric acid was applied to a soil incubated anaerobically up to 70 days. The capacity of interlayer sites increased with an increase of weakly fixed NH 4 + during the initial 28 days (r = 0.78, P < 0.01), and remained stable thereafter. On the other hand, the concentration of exchangeable NH 4 + increased curvilinearly during the whole incubation period, which was correlated with an increase of weakly fixed NH 4 + (r = 0.85, P < 0.01). These results suggested that the dynamics of weakly fixed NH 4 + in a paddy soil is regulated not only by the chemical equilibrium between exchangeable and weakly fixed NH 4 + but also by the capacity of interlayer sites within a few weeks after flooding.