Photodegradation of dissolved organic matter (DOM), collected from two upstream and one downstream sites in the Lake Biwa watershed in Japan, was investigated using fluorescence properties of three-dimensional excitation emission matrix (3-D EEM). Solar irradiation caused a decrease in the dissolved organic carbon (DOC) concentration and in the fluorescence peak intensity (FI) of fulvic acid (FA)-and protein-like substances in DOM. Mineralization of DOC during an irradiation period (13 days) was observed to be higher in upstream samples (32-36%) compared to that in downstream sample (16%). DOC concentration in samples stored in the dark significantly decreased in the downstream sample (16%), while those in upstream samples hardly decreased (1-8%). The FI of FA-like substance decreased by 72-84% during 13-days irradiation (integrated solar intensity = 176 MJ m -2 ). The protein-like fluorescence was only observed in the downstream sample and the net decrease in the FI was 59% in the irradiated sample. The first-order reaction kinetics was applied to analyze the photodegradation of DOM. Two-step photodegradation was suggested for the fluorescent DOM (FDOM), while not for the DOC. Results obtained here suggested that FA-like FDOM is more susceptible to photodegradation compared with those of protein-like substances and DOC.Keywords: dissolved organic carbon, fulvic acid-like fluorescence, protein-like fluorescence, photodegradation, streams as benzene containing carboxyl, methoxylate and phenolic groups, hydroxycoumarin-like structures, and fluorophores containing the Schiff-base system, chromone, xanthone, and quinoline derivatives (Senesi, 1990;Leenheer and Croue, 2003). On the other hand, amino acids in freshwaters have been detected in a combined form, mostly humic bound or colloidal in river waters (Volk et al., 1997;Baker et al., 2007) and affected by anthropogenic sources (Baker, 2001(Baker, , 2002a(Baker, , 2002bMostofa et al., 2005a). FA-and protein-like substances are the major components of the fluorescent dissolved organic matter (FDOM) in natural waters (Senesi, 1990;Coble, 1996; Yamashita and Tanoue, 2003 and references therein). The florescent components such as FA-and protein-like substances have been investigated by the three-dimensional excitation emission matrix (3-D EEM). Due to simplicity of the 3-D EEM technique, it is now widely used for characterization of FDOM and for determinations of the nature, sources and quantity of FDOM in natural waters (Baker, 2001(Baker, , 2002aCoble, 1996;Yamashita and Tanoue, 2003;Mostofa, 2005; Mostofa et al., 2005a, b). The 3D-EEM of FA-or humiclike substances in the aquatic DOM, in general, has been shown a major fluorescence peak within a range of excitation/emission (Ex/Em) wavelengths of 320-390/420-490 nm (Coble et al