Data matching technology is a key technology for spatial data integration and fusion. This paper represents a solution to the complex polygon area, defines the area overlapped rate in the aspect of geometric measure, presents the data matching idea based on area overlapped rate .Then, this paper discusses and realizes the data matching relation of area elements including one to one , many to one and many to many. At last, region targets are set as the study object, large scale data are taken for example. We draw the conclusion: this algorithm is efficient.