In
this work, peptides selected from a microarray were found to
inhibit β-gal with promiscuous mechanisms. Peptides inhibited
the enzyme in a noncompetitive kinetics, and the inhibition of enzyme
activities was reduced under high enzyme concentrations and the addition
of detergent. Dynamic light scattering and atomic force microscope
revealed that peptide/enzyme aggregation was related to inhibited
enzyme activities. Positively charged residues of arginine and lysine
were critical for the enzyme inhibition. The preincubation of peptide
inhibitors with negatively charged biopolymers of polyphosphates,
ssDNA, and low pI peptides could increase the residual activity of
peptide-inhibited enzyme, possibly due to the disruption of the electrostatic
interaction between positively charged peptide residues and the β-gal
surface. Further, negative biopolymers were able to recover the activity
of the aggregated peptide/β-gal complex. Negatively charged
biopolymers could be used in high-throughput screening assays to reduce
peptides/protein aggregation and thereby minimize promiscuous inhibitions.