The affinity of a drug to serum proteins has a major clinical significance on both pharmacokinetics and pharmacodynamics in vivo. [1][2][3] It is well known that unbound drug to serum protein is excreted from the body by diverse elimination processes, while bound drug constantly serves to recruit unbound drug to the plasma concentration. Consequently, a high level of protein binding prolongs the duration of total drug concentration in blood, whereas protein binding reduces the unbound fraction (fu) and therefore the pharmacological activity of a drug. Thus, the degree of protein binding is a key factor in the delicate balance between the intended pharmacological activity and potential unintentional effects of the drug.According to the recent advances in high-throughput screening technology, [4][5][6] multifaceted approaches such as pharmacokinetics, toxicity and physicochemical properties are now becoming more important in the drug discovery process. Namely, the strategy to select a drug candidate shifts from a bias toward the pharmacological activity to a balance in the pleiotropic properties including ADME (absorption, distribution, metabolism, excretion), physicochemical parameter and so on. An early survey of the protein binding level is one of the significant evaluations, as well as other ADME parameters. In particular, the evaluation of the effect of protein binding on the pharmacological activity is essential information for drug design.Many reports concerned with the assessment of protein binding and simplified approaches for the determination of protein binding are being considered. The conventional methods such as equilibrium dialysis, 7) surface plasmon resonance (SPR),3) ultrafiltration, 8) ultracentrifugation 9) and so on were improved and/or developed as high-throughput screening technology.In view of this, we need to pay attention to the difference of affinity to serum protein such as specific and nonspecific binding. 7-Hydroxystaurosporine was reported to be nonspecifically bound to rat a 1 -acid glycoprotein (rAGP), 10) whereas its protein binding to human AGP (hAGP) was the sum of specific and nonspecific binding. The pharmacokinetics of 7-hydroxystaurosporine in humans have shown a very distinctive feature, i.e., low clearance/distribution volume and a long half-life in contrast to the experimental animals. Therefore, Fuse et al. showed that the specific high affinity binding to hAGP is one of the reasons for unusual pharmacokinetics of 7-hydroxystaurosporine in clinical studies. 10) Consequently, the difference of affinity, as well as the extent of bound was suggested to play a key role in drug pharmacokinetics and/or the pharmacological activity.The concentration dependence of percent bound, i.e., Scatchard plot analysis by equilibrium dialysis, has been studied in order to examine the difference of affinity. However, feasibility of the conventional methods relies either on a separation of bound and unbound drugs or on the physicochemical properties of drugs such as adsorption to membrane/th...