Quantum theory provides us with the best account of microscopic components of matter as well as of radiation. It was introduced in the twentieth century and has experienced a wide range of success. Although the theory’s probabilistic predictions of final experimental outcomes is found to be correct with high precision, there is no general consensus regarding what is actually going on with a quantum system “en route”, or rather the perceivable intermediate behavior of a quantum system, e.g., the particle’s behavior in the double-slit experiment. Neutron interferometry using single silicon perfect crystals is established as a versatile tool to test fundamental phenomena in quantum mechanics, where an incident neutron beam is coherently split in two or three beam paths with macroscopic separation of several centimeters. Here, we present quantum optical experiments with these matter-wave interferometers, studying the effect of the quantum Cheshire Cat in some variants, the neutron’s presence in the paths of the interferometer as well as the direct test of a commutation relation. To reduce disturbances induced by the measurement, the interaction strength is lessened and so-called weak interactions are exploited by employing pre- and post-selection procedures. All results of the experiments confirm the predictions of quantum theory; the observed behaviors of the neutron between the pre- and post-selection in space and time emphasize striking and counter-intuitive aspects of quantum theory.