“…Analysis of the Atlantic salmon Pa promoter using AliBaba 2.1, showed correct prediction of both ERE motifs with the default set up and was used for analysis of the Atlantic salmon GnRH-III Pa and downstream (Pb) promoter [29], human GnRH-I upstream [35] and downstream [36], striped bass ( Morone saxatilis ) GnRH-I [37], rat ( Rattus norwegicus ) GnRH-I [38], and African cichlid GnRH-I and GnRH-III promoters [22], using optimized and decreased stringency when necessary. Transcription factors experimentally shown to be involved in the regulation of GnRH expression, or to possess binding affinity to the promoter, include the POU factors Oct-1 and Oct-6 [39,40], ERE [7,8,34,41-43], glucocorticoid receptor (GR) [44], progesterone receptor (PR) [8,45,46], GATA-1 [47,48], cyclic AMP responsive element binding protein (CREB) [49], SF-1 [50] and Otx2 [51]. In silico predicted TF binding sites include Ap-1, ERE, GHF-2, GH-CSE2 and Pit-1 in Pacific salmon ( Oncorhynchus nerka ) [52], Ap-1, GR, PR, and Sp1 in African cichlid [22], Ap-1, CREB, ERE, GATA, GR, and Oct-1 in masu salmon ( Oncorhynchus masou ) [53], and members of the POU family, Ap-1, Brn-2, CREB, ERE, GR, Pit-1, and SF-1 in striped bass [37].…”