The cytosol of mammalian cells is a crowded environment containing soluble proteins and a network of cytoskeletal filaments. Gene delivery by synthetic vectors involves the endocytosis of DNA-polycation complexes, escape from endosomes, and diffusion of non-complexed DNA through the cytosol to reach the nucleus. We found previously that the translational diffusion of large DNAs (>250 bp) in cytoplasm was greatly slowed compared with that of smaller DNAs (Lukacs, G. L., Haggie, P. Gene delivery by non-viral vectors is a complex and inefficient process that involves cellular internalization by endocytosis, escape from endosomes, DNA-polycation dissociation, and diffusion of non-complexed DNA in the cytoplasm to reach the nucleus (1-3). DNA diffusion in the cytoplasm and nuclear import are believed to be rate-limiting determinants of transgene delivery, extending the time that non-complexed DNA is exposed to cytosolic DNases. Remarkably, Ͻ0.1% of DNA microinjected into the cytosol is ultimately expressed (4, 5). We measured previously the mobility of differently sized DNAs in cytoplasm by photobleaching cells after microinjection with fluorescently labeled DNAs (6). The principal finding was that DNA diffusion in cytoplasm (D cyto ) was modestly slowed compared with that in saline (D o ) (D cyto /D o ϳ 0.2) for small DNA fragments of Ͻ250 bp but was greatly reduced (D cyto /D o Ͻ 0.05) for larger DNAs of Ͼ250 bp such as plasmid-sized DNAs. In contrast, the diffusion of dextrans and Ficolls, which are considered to be non-interacting macromolecules, was only mildly dependent on their size up to 500 -1000 kDa (7), which is equivalent in molecular mass to a 750 -1500-bp DNA fragment. Identification of the mechanism of reduced mobility of large DNAs in cytoplasm has important consequences regarding intrinsic limitations of non-viral gene delivery and in developing strategies to improve its efficacy.Several factors can in principle reduce the diffusion of a solute in cytoplasm versus saline, including fluid phase viscosity, binding, and crowding by mobile and immobile macromolecules (8). Systematic analysis of the diffusion of a small fluorescein-like molecule in cytoplasm indicated that reduced diffusion in cytoplasm (D cyto /D o ϳ 0.25) resulted mainly from macromolecular crowding by the relatively high concentration of proteins in cytoplasm of ϳ100 -150 mg/ml (reviewed in Refs. 9 and 10). Fluid phase viscosity, defined as the effective viscosity sensed by a small molecule that does not undergo binding or other macromolecular interactions, has little influence on cytoplasmic diffusion (11,12). Binding can greatly reduce apparent diffusion, as was found for some enzymes that assemble into macromolecular complexes (13). As a densely charged polyanion, DNA binding to cytoplasmic components could be an important factor in reducing its diffusion in cytoplasm as was found in the nucleus, where DNA is nearly immobile probably because of binding to positively charged histones (6,14). DNA diffusion in heterogeneous polydispers...