Dorsolateral prefrontal cortex (DLPFC) and temporal pole (TP) are brain
regions that display abnormalities in bipolar disorder (BD) patients. DNA
methylation — an epigenetic mechanism both heritable and sensitive to the
environment — may be involved in the pathophysiology of BD. To study
BD-associated DNA methylomic differences in these brain regions, we extracted
genomic DNA from the postmortem tissues of Brodmann Area (BA) 9 (DLPFC) and BA38
(TP) gray matter from 20 BD, ten major depression (MDD), and ten control
age-and-sex-matched subjects. Genome-wide methylation levels were measured using
the 850 K Illumina MethylationEPIC BeadChip. We detected striking differences
between cortical regions, with greater numbers of between-brain-region
differentially methylated positions (DMPs; i.e., CpG sites) in all groups, most
pronounced in the BD group, and with substantial overlap across groups. The
genes of DMPs common to both BD and MDD (hypothetically associated with their
common features such as depression) and those distinct to BD (hypothetically
associated with BD-specific features such as mania) were enriched in pathways
involved in neurodevelopment including axon guidance. Pathways enriched only in
the BD-MDD shared list pointed to GABAergic dysregulation, while those enriched
in the BD-only list suggested glutamatergic dysregulation and greater impact on
synaptogenesis and synaptic plasticity. We further detected group-specific
between-brain-region gene expression differences in
ODC1, CALY,
GALNT2,
and
GABRD
, which contained significant
between-brain-region DMPs. In each brain region, no significant DMPs or
differentially methylated regions (DMRs) were found between diagnostic groups.
In summary, the methylation differences between DLPFC and TP may provide
molecular targets for further investigations of genetic and environmental
vulnerabilities associated with both unique and common features of various mood
disorders and suggest directions of future development of individualized
treatment strategies.