The cDNAs encoding two different anionic forms of Atlantic cod trypsinogen have been isolated and sequenced. The nucleotide sequences include the 5'-noncoding and 3'-noncoding regions in addition to preproenzymes of 241 amino acids. These consist of hydrophobic signal peptides, activation hexapeptides and trypsins of 222 amino acid residues. The cod trypsins contain all the major structural features common to trypsins such as the catalytic triad His57, Asp102 and Ser195. Furthermore, the obligatory Asp189 and the six disulphide bonds are conserved. Eight amino acid residues are different between the isozymes, leading to a difference of four charges. Both cod trypsins are one-amino-acid-residue shorter than most mammalian trypsins as a result of deletion of proline at position 152, and have a high methionine content. In addition, the cod preproenzyme signal and activation peptides differ markedly from their mammalian analogues. The amino acid identity between the cod and bovine trypsins is approximately 60%.Trypsin, chymotrypsin and elastase belong to the serineprotease family. In addition to an essential serine residue at their active site, they share an identical catalytic mechanism. The mammalian serine proteases are among the most thoroughly studied enzymes, both structurally and functionally.Trypsins from various species are highly similar with respect to their amino acid sequences [l -51. Also, the threedimensional structures available for mammalian trypsins have revealed a strong structural similarity among these enzymes [6, 71. Thus, the trypsins provide a useful model system for studying the relationship between sequence, structure and function.Three anionic trypsin isozymes, termed trypsins I, 11, and 111 with isoelectric points of 6.6, 6.2 and 5.5, respectively, have been isolated from the pyloric caeca of Atlantic cod [8]. All three isozymes showed higher catalytic efficiencies (kca,/ K,) than their bovine counterparts over a range of different temperatures. The catalytic efficiency of the most active form of cod trypsin (trypsin I) was 17-fold higher at 25°C than that of bovine trypsin. Furthermore, the isozymes were less thermostable and acid stable than the bovine analogue [8].Other serine proteases, such as chymotrypsin [9] and elastase [lo] isolated from the Atlantic cod show similar kinetic and temperature characteristics in comparison to their mammalian analogues. Thus, the cod serine proteases have been classified as cold-adapted (pshychrophilic) enzymes.Several other fish trypsins have been characterized with respect to kinetic parameters [ll -141, isoelectric points [13-161 and amino acid composition [13, 15-17] Here we present the cDNA sequences and deduced amino acid sequences of two different trypsin clones isolated from the pyloric caeca of Atlantic cod. One qf the clones appears to be trypsin I previously isolated by Asgeirsson et al. [8], but the other may be either trypsin I1 or trypsin 111. In addition to the trypsinogen-coding region, the nucleotide sequences include the 5'-nontr...