“…Total RNA isolation, RT-PCR, and densitometric quantification of RT-PCR products. Total RNA isolation, the primers used, and reverse transcription-PCR (RT-PCR) procedures were performed with the PAMs collected by BAL in the in vivo study and the cultured PAMs from the in vitro study, as described previously (31,32). RT-PCRs for IL-1␣, IL-1, IL-6, IL-8, IL-10, IL-12 (p40), TNF-␣, and cyclophilin (a housekeeping gene) were performed with a Mastercycler instrument (Eppendorf, Westbury, N.Y.) and an Access RT-PCR system (Promega, Madison, Wis.).…”