Background: Palmitoylation of phosphatidylinositol 4-kinase II␣ (PI4KII␣) regulates its function and Golgi localization, and cholesterol depletion delocalizes Golgi PI4KII␣ and inhibits activity. Results: Palmitoyl acyltransferases (PATs) that palmitoylate PI4KII␣ were identified. Cholesterol extraction inhibited PI4KII␣ association with PATs, decreased palmitoylation, and reduced Golgi phosphatidylinositol 4-phosphate. Conclusion: Cholesterol has a critical role in regulating PI4KII␣ interaction with PATs and palmitoylation. Significance: This study uncovered a novel mechanism for preferential recruitment of PI4KII␣ to Golgi.