Differences in density: taxonomic but not functional diversity in seaweed microbiomes affected by an earthquake

Abstract

Host-associated microbial communities can make important contributions to host health, and are shaped by a range of different factors ranging from host condition, environmental conditions, and other microbes. Disentangling the roles of these factors can be particularly difficult as many variables are correlated. Here, we leveraged earthquake-induced changes in host density to identify the influence of host density on microbiome composition. A large (7.8 magnitude) earthquake in New Zealand in 2016 led to widespread coastal uplift of up to ~6m, sufficient to locally extirpate some intertidal kelp populations. These uplifted populations are slowly recovering, but intertidal kelps remain at much lower densities than at nearby, less uplifted sites. By comparing the microbiome of the low and high density sites using 16S amplicon sequencing, we observed that low density populations had higher beta-diversity than high density populations with regards to taxonomic variability, while no beta-diversity differences were observed between functional categories. Using phylogenetic and taxonomic turnover approaches, we determined that dispersal limitation shapes low density populations to a greater extent, while homogeneous selection shapes high density populations to a greater extent. Our findings shed light on microbiome assembly processes, particularly highlighting that large-scale disturbances that affect host density can dramatically influence microbiome structure.

A Cry For Kelp: Evidence for Polyphenolic Inhibition of Oxford Nanopore Sequencing of Brown Algae

“…For LC-MS analysis, a recently developed protocol optimized for DNA extraction (Pearman et al, 2023) was used. DNA was extracted from ~200mg of chicken breast muscle tissue or ~100mg of silica dried Durvillaea antarctica tissue (stored for 1 month on silica at room temperature).…”