Sea urchin embryo metallothionein (MT) mRNAs MTa and MTb have distinct cDNA sequences and are transcripts of different genes of a multigene family. These MT mRNAs differ in size and in their 3'-untranslated sequences. They encode proteins that are unusual among MT isotypes in that the relative positions of their cysteine residues are partially out of register, suggesting potential differences in function. In pluteus larvae MTa mRNA is expressed abundantly and exclusively in the ectoderm, while MTb mRNA, which is restricted to the endomesoderm at a low endogenous level, can be induced to a high level by heavy metal ions (M2+). MT mRNA is present in the maternal reservoir of the egg and is predominantly (>95%) MTa mRNA. Endogenous expression in the embryo, which is at a much higher level than in the egg, requires M2+ for gene transcription, is developmentally regulated, and is >90% MTa mRNA. When induced by added M2+, however, MTa and MTb mRNAs accumulate to almost equal levels. The differences in the ratios of MTa/MTb expressed endogenously and inductively are not attributable to differences in the stabilities of these MT mRNAs, which were observed under conditions of M2+ depletion, or in their inducibilities, which were observed at moderate to high M2+ levels. We found, instead, that the MTa gene responds to M2' at a lower threshold level than MTb, so that at very low M2+ concentrations the ratio of induced MTa/MTb mRNA is high and equivalent to the endogenous ratio. Thus, endogenous expression of the MTa gene is selectively enhanced in the ectoderm by determinants that are responsive at low M2+ threshold concentrations.Metallothioneins (MTs) are small, cysteine-rich proteins that are induced by heavy metal ions and encoded by one to several genes in the many organisms known to contain them. These proteins bind heavy metals, and it is believed that they are involved in various aspects of heavy metal metabolism, including the detoxification, storage, and intracellular transfer of these ions. The pattern of regulation of multiple MT genes is apparently diverse among higher organisms. In the mouse, for example, the MTI and MTII genes are coordinately induced by heavy metal ions, by glucocorticoids (36), and during embryonic development (1). On the other hand, the human MTIa, MTIIa, and MTIf genes are differentially regulated by various inducing agents (33) and, furthermore, display cell-type-specific expression (34,41). This diversity is consistent with the human MT genes having distinct physiological functions (33).Recent observations on the regulated expression of MT mRNA in the sea urchin embryo offer potential insights into the physiological, and especially the developmental, function of these proteins and possibly also into MT gene diversity in a system that is highly amenable to experimentation (28). Nemer et al. (28) found that in the sea urchin endogenous MT mRNA accumulation is temporally regulated during embryogenesis and is largely restricted to ectodermal tissue in the pluteus larva. Moreover, although...