Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons.

Yumoto, Isao; Nakamura, Akio; Iwata, Hidehisa; Kojima, Kiyoshi; Kusumoto, Keita; Nodasaka, Yoshinobu; Matsuyama, Hidetoshi

doi:10.1099/00207713-52-1-85

Cited by 150 publications

(101 citation statements)

References 28 publications

(11 reference statements)

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…is an oxidizing process [6,13,61,78]. However, the degradation pathways of these compounds are different, due to the different structures of petroleum components, such as saturated, aromatic, resin, and asphaltene fractions hydrocarbon.…”

Section: Degradation Of Petroleum By Degrading Microorganisms Degradamentioning

confidence: 99%

“…It can be degraded under enzymes catalyzing into glycol or catechol groups, then further decomposed into acetyl coA or succinic acid [78]. Generally, the degradation pathway is that PAHs are gradually degraded into epoxide, trans diol, phenol, and trans dihydro 2 phenol by monooxygenase of yeast.…”

Section: Degrading Process Of Polycyclic Aromatic Hydrocarbons (Pahs)mentioning

confidence: 99%

See 1 more Smart Citation

Marine Oil-Degrading Microorganisms and Biodegradation Process of Petroleum Hydrocarbon in Marine Environments: A Review

Yu²,

et al. 2015

View full text Add to dashboard Cite

Due to the toxicity of petroleum compounds, the increasing accidents of marine oil spills/leakages have had a significant impact on our environment. Recently, different remedial techniques for the treatment of marine petroleum pollution have been proposed, such as bioremediation, controlled burning, skimming, and solidifying. (Hedlund and Staley in Int J Syst Evol Microbiol 51: [61][62][63][64][65][66] 2001). This review introduces an important remedial method for marine oil pollution treatment-bioremediation technique-which is considered as a reliable, efficient, cost-effective, and eco-friendly method. First, the necessity of bioremediation for marine oil pollution was discussed. Second, this paper discussed the species of oil-degrading microorganisms, degradation pathways and mechanisms, the degradation rate and reaction model, and the factors affecting the degradation. Last, several suggestions for the further research in the field of marine oil spill bioremediation were proposed.

show abstract

Section: Degradation Of Petroleum By Degrading Microorganisms Degradamentioning

confidence: 99%

Section: Degrading Process Of Polycyclic Aromatic Hydrocarbons (Pahs)mentioning

confidence: 99%

Marine Oil-Degrading Microorganisms and Biodegradation Process of Petroleum Hydrocarbon in Marine Environments: A Review

Yu²,

et al. 2015

View full text Add to dashboard Cite

show abstract

“…The procedure for TEM and SEM preparations and observations were performed as described by Yumoto et al (2002).…”

mentioning

confidence: 99%

“…Analysis of whole-cell fatty acids was performed as described by Yumoto et al (2001Yumoto et al ( , 2002.…”

mentioning

confidence: 99%

Bacillus asahii sp. nov., a novel bacterium isolated from soil with the ability to deodorize the bad smell generated from short-chain fatty acids

Yumoto

Hirota

Yamaga

et al. 2004

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

In a screening campaign to isolate strains with the ability to remove the bad smell associated with animal faeces, strain MA001T was isolated from a soil sample obtained from Shizuoka prefecture, Japan. The isolate grew at pH 6–9 but not at pH 10. Cells were Gram-positive, straight rods with peritrichous flagella and produced ellipsoidal spores. The isolate was positive for catalase and oxidase tests but negative for indole production, deamination of phenylalanine and H2S production. The isolate did not produce acid from any carbohydrates tested and could not grow in more than 2 % NaCl. The DNA G+C content was 39·4 mol%. The cellular fatty acids profile consisted of significant amount of C15 branched-chain fatty acids, iso-C15 : 0 and anteiso-C15 : 0. Phylogenetic analysis based on 16S rRNA gene sequencing indicated that strain MA001T was closely related to Bacillus simplex and Bacillus psychrosaccharolyticus. DNA–DNA hybridization revealed a low relatedness of the isolate to several phylogenetically close neighbours (less than 9 %). On the basis of the phenotypic characteristics observed, phylogenetic data based on 16S rRNA gene sequencing and DNA–DNA relatedness data, it is concluded that the isolate should be classified as representing a novel species, for which the name Bacillus asahii is proposed. The type strain is MA001T (=JCM 12112T=NCIMB 13969T).

show abstract

“…The DNA G+C content of strain N314 T was 38.4 mol%. Whole-cell fatty acids and isoprenoid quinones were analysed as described previously (Yumoto et al, 2002). The presence of meso-diaminopimelic acid (meso-DAP) in the cell wall was analysed in strain N314 T by TLC (Staneck & Roberts, 1974).…”

mentioning

confidence: 99%

Amphibacillus iburiensis sp. nov., an alkaliphile that reduces an indigo dye

Hirota

Aino

Yumoto

2013

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

An indigo-reducing alkaliphilic strain, designated strain N314 T , was isolated from a fermented polygonum indigo (Polygonum tinctorium Lour.) liquor sample, aged for 10 months, that was obtained from Date City, Iburi Branch, Hokkaido, Japan. The 16S rRNA gene sequence phylogeny suggested that strain N314 T is a member of the genus Amphibacillus, with the closest relatives being Amphibacillus indicireducens (98.9 % similarity to the type strain) and Amphibacillus xylanus (98.0 % similarity to the type strain), the only species with 16S rRNA gene sequence similarities higher than 97 % to strain N314 T . The cells of the isolate stained Gram-positive and were facultatively anaerobic, straight rods that were motile by means of peritrichous flagella. The strain grew at 26-39 6C with optimum growth at 36 6C. It grew at pH 8.0-9.1, with optimum growth at pH 8.9-9.1. No isoprenoid quinone was detected, and the DNA G+C content was 38.4 mol%. The whole-cell fatty acid profile consisted mainly of iso-C 15 : 0 and anteiso-C 15 : 0 . Analysis of DNA-DNA hybridization with the type strains of A. indicireducens and A. xylanus revealed 29±2 % and 10±2 % relatedness, respectively. Owing to differences in phenotypic characteristics from reported species of the genus A. and results of phylogenetic analyses based on 16S rRNA gene sequences and DNA-DNA relatedness data, the isolate merits classification within a novel species, for which the name Amphibacillus iburiensis sp. nov. is proposed. The type strain is N314 T (5JCM 18529 T 5NCIMB 14823 T ).

show abstract

Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons.

Cited by 150 publications

References 28 publications

Marine Oil-Degrading Microorganisms and Biodegradation Process of Petroleum Hydrocarbon in Marine Environments: A Review

Marine Oil-Degrading Microorganisms and Biodegradation Process of Petroleum Hydrocarbon in Marine Environments: A Review

Bacillus asahii sp. nov., a novel bacterium isolated from soil with the ability to deodorize the bad smell generated from short-chain fatty acids

Amphibacillus iburiensis sp. nov., an alkaliphile that reduces an indigo dye

Contact Info

Product

Resources

About