2020
DOI: 10.3390/ijms21197331
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Dietary Erythrodiol Modifies Hepatic Transcriptome in Mice in a Sex and Dose-Dependent Way

Abstract: Erythrodiol is a terpenic compound found in a large number of plants. To test the hypotheses that its long-term administration may influence hepatic transcriptome and this could be influenced by the presence of APOA1-containing high-density lipoproteins (HDL), Western diets containing 0.01% of erythrodiol (10 mg/kg dose) were provided to Apoe- and Apoa1-deficient mice. Hepatic RNA-sequencing was carried out in male Apoe-deficient mice fed purified Western diets differing in the erythrodiol content. The adminis… Show more

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Cited by 9 publications
(9 citation statements)
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“…Supplementary Table S6 lists the most strikingly influenced genes by the steatotic diet (log 2 fold change < − 2.5 and > 4.5). Based on our previous experience, where only transcripts whose levels were higher than 0.3 fragments per kilo base per million mapped reads (FPKM) and readings displayed in more than 75% of samples, were reliably confirmed by RT-qPCR 39 , a meticulous screening of readings was undertaken. As shown in Fig.…”
Section: Resultsmentioning
confidence: 99%
“…Supplementary Table S6 lists the most strikingly influenced genes by the steatotic diet (log 2 fold change < − 2.5 and > 4.5). Based on our previous experience, where only transcripts whose levels were higher than 0.3 fragments per kilo base per million mapped reads (FPKM) and readings displayed in more than 75% of samples, were reliably confirmed by RT-qPCR 39 , a meticulous screening of readings was undertaken. As shown in Fig.…”
Section: Resultsmentioning
confidence: 99%
“…The resulting 6 samples were sent to the Beijing Genomics Institute (BGI Genomics, Shenzhen, China) service. RNA quality tested, library construction, sequencing reads and posterior clean, genome mapping, analysis, identification, and quantification were realized as previously described [36]. A Bioinformatics flow of about 4.52 Gb per sample had an average genome mapping rate of 93.1%.…”
Section: Rnaseq Analysismentioning
confidence: 99%
“…To verify the most relevant changes induced by the absence of TXNDC5 using RNAseq, represented by signal log 2 ratio > 1.0 or <−1.0 and a p value < 0.005 for upregulated and downregulated, respectively, 10 genes fulfilling these criteria were chosen. Primer design (Supplementary Table S1), RT-PCR and cDNA synthesis were carried out as previously described [36]. ViiA7 Real-TIME PCR System (Life Technologies) was used, and relative amount of mRNA was calculated using the comparative 2 −∆∆Cq method and normalized to the reference Ppib expressions.…”
Section: Quantification Of Mrna and Cdna Synthesismentioning
confidence: 99%
“…ED inhibited proliferation and promoted apoptosis in HT-29 adenocarcinoma cells [ 142 ]. Adding ED (10 mg/kg) to a western diet after 12 weeks significantly decreased lipid droplets in liver male ApoE/ApoA1-deficient mice [ 143 ]. Hepatic transcriptome analysis of these mice revealed altered gene expression in pathways related to detoxification, protein metabolism, and nucleic acid-related metabolites.…”
Section: Biological Effects Of Naturally Occurring Analogues Of Uamentioning
confidence: 99%