Abstract:We investigated the proton dynamics of crystalline bisquaric acid (H 2 BSQ) in terms of the temperature and frequency dependence of its permittivity. It was found that the dielectric response of the H 2 BSQ crystal exhibited two-step changes. With raising temperature, the dielectric permittivity increased slightly at 40 K. Whereas the temperature dependence of the permittivity at this temperature showed a large isotope effect, there was no frequency dependence of the permittivity. However, the permittivity inc… Show more
“…The gain in (14) shows the interesting dependence of on the coupling parameters J 1 , J 2 and the applied electric field. Equation (14) determines the stability and instability of a plane wave with wavenumber q in discrete HB chains.…”
Section: Discrete Solitons Via Modulational Instabilitymentioning
confidence: 97%
“…Most of the papers that mention HB chains or proton channels assume that such channels will transport fast and sufficiently for bioenergetic purposes [2,11]. Recently, extensive theoretical investigations [12][13][14][15][16] and also some experimental evidence [17] predicted that solitons may give some answers to the fundamental question of the transmission of energy in biological macromolecules. The proton dynamics in HB chains is often modeled by a characteristic non-linear substrate potential with two degenerate equilibrium positions.…”
Non-linear localization phenomena in biological lattices have attracted a steadily growing interest and their existence has been predicted in a wide range of physical settings. We investigate the non-linear proton dynamics of a hydrogen-bonded chain in a semiclassical limit using the coherent state method combined with a Holstein-Primakoff bosonic representation. We demonstrate that even a weak inherent discreteness in the hydrogenbonded (HB) chain may drastically modify the dynamics of the non-linear system, leading to instabilities that have no analog in the continuum limit. We suggest a possible localization mechanism of polarization oscillations of protons in a hydrogen-bonded chain through modulational instability analysis. This mechanism arises due to the neighboring protonproton interaction and coherent tunneling of protons along hydrogen bonds and/or around heavy atoms. We present a detailed analysis of modulational instability, and highlight the role of the interaction strength of neighboring protons in the process of bioenergy localization. We perform molecular dynamics simulations and demonstrate the existence of nanoscale discrete breather (DB) modes in the hydrogen-bonded chain. These highly
“…The gain in (14) shows the interesting dependence of on the coupling parameters J 1 , J 2 and the applied electric field. Equation (14) determines the stability and instability of a plane wave with wavenumber q in discrete HB chains.…”
Section: Discrete Solitons Via Modulational Instabilitymentioning
confidence: 97%
“…Most of the papers that mention HB chains or proton channels assume that such channels will transport fast and sufficiently for bioenergetic purposes [2,11]. Recently, extensive theoretical investigations [12][13][14][15][16] and also some experimental evidence [17] predicted that solitons may give some answers to the fundamental question of the transmission of energy in biological macromolecules. The proton dynamics in HB chains is often modeled by a characteristic non-linear substrate potential with two degenerate equilibrium positions.…”
Non-linear localization phenomena in biological lattices have attracted a steadily growing interest and their existence has been predicted in a wide range of physical settings. We investigate the non-linear proton dynamics of a hydrogen-bonded chain in a semiclassical limit using the coherent state method combined with a Holstein-Primakoff bosonic representation. We demonstrate that even a weak inherent discreteness in the hydrogenbonded (HB) chain may drastically modify the dynamics of the non-linear system, leading to instabilities that have no analog in the continuum limit. We suggest a possible localization mechanism of polarization oscillations of protons in a hydrogen-bonded chain through modulational instability analysis. This mechanism arises due to the neighboring protonproton interaction and coherent tunneling of protons along hydrogen bonds and/or around heavy atoms. We present a detailed analysis of modulational instability, and highlight the role of the interaction strength of neighboring protons in the process of bioenergy localization. We perform molecular dynamics simulations and demonstrate the existence of nanoscale discrete breather (DB) modes in the hydrogen-bonded chain. These highly
“…Moreover, the transition temperature rises to 274 K upon deuterium substitution of the H‐bonded hydrogen atoms (the Supporting Information, Figure S14). This isotope effect stems from a decrease in the zero‐point energy of deuterium, which is heavier than hydrogen 7b. 9b, 13, 28 This reveals that the proton (deuteron) order–disorder transition in the H‐bonds plays a major role in the phase transition mechanism.…”
Section: Resultsmentioning
confidence: 99%
“…The soliton model for proton transfer (the ADZ model) was first proposed by Antonchenko, Davydov, and Zolotaryuk to describe collective proton transport in ice 1a. 30 This protonic soliton mechanism has been proposed to explain the dielectric response observed in 1D H‐bonded chain systems of bisquaric acid and dabcoHX (dabco=1,4‐diazabicyclo[2.2.2]octane, X − =Br − , I − , and BF 4 − ) 7b. 31 In strongly H‐bonded 1D solids of 3‐hydroxyenone derivatives, their IR spectra exhibit a low‐lying weak band around 1800 cm −1 , called the S band, which becomes sharper with decreasing temperature, in addition to a broad OH stretching mode around 2500 cm −1 7.…”
Section: Resultsmentioning
confidence: 99%
“…Sugawara and Mochida et al. have found three proton dynamics phenomena resulting from the controlled dimensionality of the H‐bonded π‐conjugated electron system and the intervention of water molecules in the H‐bonds: A protonic soliton7b and proton relay10 in which the proton moves over a barrier as a classic particle and a proton tunneling 11. Furthermore, PCET is not restricted to biological systems but also occurs in molecular materials 2a.…”
A newly synthesized one-dimensional (1D) hydrogen-bonded (H-bonded) rhodium(II)-η(5)-semiquinone complex, [Cp*Rh(η(5)-p-HSQ-Me4)]PF6 ([1]PF6; Cp* = 1,2,3,4,5-pentamethylcyclopentadienyl; HSQ = semiquinone) exhibits a paraelectric-antiferroelectric second-order phase transition at 237.1 K. Neutron and X-ray crystal structure analyses reveal that the H-bonded proton is disordered over two sites in the room-temperature (RT) phase. The phase transition would arise from this proton disorder together with rotation or libration of the Cp* ring and PF6(-) ion. The relative permittivity εb' along the H-bonded chains reaches relatively high values (ca., 130) in the RT phase. The temperature dependence of (13)C CP/MAS NMR spectra demonstrates that the proton is dynamically disordered in the RT phase and that the proton exchange has already occurred in the low-temperature (LT) phase. Rate constants for the proton exchange are estimated to be 10(-4)-10(-6) s in the temperature range of 240-270 K. DFT calculations predict that the protonation/deprotonation of [1](+) leads to interesting hapticity changes of the semiquinone ligand accompanied by reduction/oxidation by the π-bonded rhodium fragment, producing the stable η(6)-hydroquinone complex, [Cp*Rh(3+)(η(6)-p-H2Q-Me4)](2+) ([2](2+)), and η(4)-benzoquinone complex, [Cp*Rh(+)(η(4)-p-BQ-Me4)] ([3]), respectively. Possible mechanisms leading to the dielectric response are discussed on the basis of the migration of the protonic solitons comprising of [2](2+) and [3], which would be generated in the H-bonded chain.
Control over the stacking patterns in 2D molecular assemblies is demonstrated using chemical modification. A target system is a hydrogen‐bonded cocrystal (2:1) composed of 2‐pyrrolidone (Py) and chloranilic acid (CA) (PyCA). X‐ray crystallography showed that weak intersheet interactions give rise to a variety of metastable overlapping patterns comprised of the 2D assemblies mainly formed via hydrogen bonds, affording reversible and irreversible structural phase transitions. We prepared cocrystals of Py and anilic acids bearing different halogens, in which 2D assemblies isostructural with those observed in PyCA exhibit various overlapping patterns. The order of stability for each overlapping pattern estimated using calculations of the intermolecular interactions did not completely coincide with those indicated by our experimental results, which can be explained by considering the entropic effect: the molecular motion of Py as detected using nuclear quadrupole resonance spectroscopy.
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