Purpose: Myelodysplastic syndrome (MDS) is a group of tumor diseases derived from hematopoietic stem cells. It has a tendency to progress to acute myeloid leukemia (AML), but the mechanism is not clear due to complicated pathogenesis. Based on the integrated analysis of gene microarray data sets, the present study established a gene expression model related to the pathogenesis of MDS, and screened target molecules which have an impact on disease progression.
Methods:We downloaded three gene microarray data sets (including 397 MDS patients and 45 normal controls) from Gene Expression Omnibus (GEO) database (http:// www.ncbi.nlm.nih.gov/geo). Then differential expressed genes (DEGs) from each data set was screened and integrated for obtaining co-expression DEGs. Enrichment analysis, network construction were performed to elucidate core genes and pathways related to the pathogenesis of MDS. Moreover, the DEGs were used to validate in extra data sets and for further exploration on online Gene Expression Profiling Interactive Analysis (GEPIA) tool (http://gepia.cancer-pku.cn/).Results: In our study, 325 co-expression DEGs including 141 up-regulated and 184 down-regulated were identified. And we found that these DEGs are enriched in interferonrelated signaling pathways, which also involve participation in antiviral responses. In addition, up-regulated hub genes such as IFIT3 and ITITM have been validated in extra data sets and had an important impact on the prognosis of patients with AML.
Conclusion:Our findings will improve our understanding of the cause and underlying molecular events in MDS and may provide new research directions for treatment strategies.