The rate of aminoacylation of tRNA catalyzed by the isoleucyl-tRNA synthetase form Escherichia coli has been measured. A steady-state kinetic analysis of the rate as a function of the concentration of ATP gave nonlinear Hanes plots. ATP behaves as an activator of the reaction. The activation is observed at a low magnesium ion concentration and in the presence of spermidine. The presence of inorganic pyrophosphate or AMP enhances the activation. The results are consistent with a mechanism in which the binding of a second molecule of ATP increases the rate of dissociation of Ile-tRNA from the enyzme.ATP, together with isoleucine and tRNA, is a normal substrate of the isoleucyl-tRNA synthetase: normal Michaelis-Menten kinetics for the formation of isoleucyl-tRNA has been observed over a wide range of ATP concentrations [1, 21. However, there are also some observations of a more complicated role of ATP in the reaction. In a careful steadystate kinetic analysis of the reaction mechanism of the isoleucyl-tRNA synthetase from Escherichia coli, Freist et al.[ 11 suggest an almost random binding of all three substrates and thereafter an apparently random release of the products. However, after the formation of the enzyme-isoleucyladenylate complex, a subsequent binding of a second molecule of ATP was postulated, in order to account for the inhibition patterns by some ATP analogs. Despite the involvement of two molecules of ATP, the double-reciprocal plots were linear (ATP as the variable substrate).Another note about abnormal ATP kinetics by McNeil and Schimmel [3] showed that ATP inhibits the ATP-PPi isotope exchange reaction. It was suggested that ATP could bind to the PPi site after formation of the isoleucyl-adenylate.In the present study we found conditions of low Mg2+ concentration plus spermidine, where the kinetics of dependence of rate on ATP concentration appeared to show activation by ATP. This anomaly is also consistent with a mechanism in which a second ATP molecule is bound to the enzyme, either to a second binding site or to the normal binding site after formation of isoleucyl-adenylate.
MATERIALS AND METHODSThe isoleucyl-tRNA synthetase from E. coli