Native actin can be isolated from pea (Pisum sativum L.) roots by DNase I affinity chromatography, but the resulting yields and quality of actin are variable. By use of two assays for actin, a DNase I inhibition assay and a gel scanning assay, we identified several factors that increased actin yield. ATP is required for the actin in crude pea root extracts to bind to immobilized DNase I. We attempted to isolate actin from pea (Pisum sativum L.) roots with DNase I affinity chromatography, but our yields were variable and the purified actin was not always able to polymerize. To optimize this procedure, we found two assays, a DNase I inhibition assay (14) and a gel scanning assay (3), that could measure relative yields of actin in crude root homogenates and in DNase I-agarose eluates, respectively. These allowed us to identify factors that affect the yield of actin isolated from pea roots by DNase I affinity chromatography.
MATERIALS AND METHODSPea plants (Pisum sativum L. cv Progress #9, Agway, Syracuse, NY) were grown in vermiculite in growth chambers (240C day, 180C night, 12-h day). Roots were cut from 5-to 8-d-old seedlings (secondary roots less than 2 cm long), washed free of vermiculite, blotted dry on paper towels, and weighed. All other procedures involving pea extracts or proteins were performed at 40C or on ice, unless otherwise specified.Stock solutions of Grade II Na2ATP (Sigma Chemical Co.), EDTA, and EGTA were adjusted to pH 7 to 7.5 with NaOH. Na2ATP concentrations were adjusted using a millimolar extinction coefficient of E259 = 15.4 mm-1 cm-'. A vanadate stock solution, prepared from V205 as described by Gallagher and Leonard (6), was a gift of Margherita De Biasi (Cornell University). Pyrophosphate stock solutions were prepared from the tetrasodium salt and adjusted to pH 8.0 with HCl. Formamide (non-ACS grade), soluble PVP (mol wt 40,000), polymerized calf thymus DNA (Type I), and prestained SDS mol wt standards (catalog #SDS-7B) were obtained from Sigma. DNase I, grade II, was from Boehringer (Indianapolis, IN). CNBr-activated Sepharose Cl-4B (Pharmacia, Piscataway, NJ) was prepared by the method of Kohn and Wilchek (9) and coupled to DNase I following the procedure of Lazarides and Lindberg (15). The DNase I-agarose was washed before each use with 40% (v/v) formamide in 25 mm Tris HCl, pH 7.5, and 5 mm CaCl2 for 20 min to remove traces of pancreatic or pea actin previously bound to the DNase I. The DNase I-agarose bound between 300 and 500 ,gg of muscle actin/mL, depending upon the batch and its age. DNase I-agarose was stored in 5 mm Tris HCl, pH 7.5, 0.5 mm CaCl2, and 0.02% NaN3.Muscle actin for controls and standards was isolated from rabbit back muscle by the method of Pardee and Spudich (25). The concentration of muscle G-actin and DNase I solutions were determined from their absorbances using extiuc-1716 www.plantphysiol.org on May 10, 2018 -Published by Downloaded from