The origin of vertebrate eyes is still enigmatic. The "frontal eye" of amphioxus, our most primitive chordate relative, has long been recognized as a candidate precursor to the vertebrate eyes. However, the amphioxus frontal eye is composed of simple ciliated cells, unlike vertebrate rods and cones, which display more elaborate, surface-extended cilia. So far, the only evidence that the frontal eye indeed might be sensitive to light has been the presence of a ciliated putative sensory cell in the close vicinity of dark pigment cells. We set out to characterize the cell types of the amphioxus frontal eye molecularly, to test their possible relatedness to the cell types of vertebrate eyes. We show that the cells of the frontal eye specifically coexpress a combination of transcription factors and opsins typical of the vertebrate eye photoreceptors and an inhibitory Gi-type alpha subunit of the G protein, indicating an off-responding phototransductory cascade. Furthermore, the pigmented cells match the retinal pigmented epithelium in melanin content and regulatory signature. Finally, we reveal axonal projections of the frontal eye that resemble the basic photosensory-motor circuit of the vertebrate forebrain. These results support homology of the amphioxus frontal eye and the vertebrate eyes and yield insights into their evolutionary origin.evolution | vision | cephalochordate T he evolutionary origin of vertebrate eyes is enigmatic. Charles Darwin appreciated the conceptual difficulty in accepting that an organ as complex as the vertebrate eye could have evolved through natural selection (1). Part of the problem lies in the paucity of extant phyla with useful gradations that occurred during eye evolution, thus providing a scenario that led to the emergence of the vertebrate eye. For example, the eye of the adult lamprey (a jawless vertebrate) is remarkably similar to the eye of jawed vertebrates in the overall design, retina cell types, and multiple classes of opsins (2). Given these similarities, it is likely that the last common ancestor of jawless and jawed vertebrates already possessed an elaborate camera-type lens eye. To understand the seemingly sudden origin of the vertebrate eye, its evolutionary precursor must be identified within the nonvertebrate chordates lacking elaborated eye structures. Because of its basal phylogenetic position within the chordates (3), its slowly evolving genome (4), and its ancestral morphology, the cephalochordate amphioxus represents a traditional model organism for understanding the origin of vertebrate organs. Extensive electron microscopy studies of the cerebral vesicle of the basal chordate amphioxus revealed several putative photoreceptive organs-dorsal ocelli, Joseph cells, lamellar body, and the unpaired "frontal eye" (5). The pigmented dorsal ocelli and the Joseph cells are morphologically and molecularly related to invertebrate eye photoreceptors (6, 7), whereas the frontal eye and the lamellar body traditionally have been homologized to the vertebrate eyes and pineal g...