Motor axon projections are topographically ordered. Medial motor column axons project to axial muscles, whereas lateral motor column axons project to limb muscles and, along the rostrocaudal axis of the animal, the more rostral motor neuron pools project to more rostral muscle targets. We have shown that EphA3 is specifically expressed in the developing medial motor column and have postulated that EphA3 might be responsible for directing their axons to axial muscle targets. This hypothesis was supported by our demonstration that EphA3 can direct retinal ganglion cell axon targeting and by studies of ephrin-A5؊/؊ mutants that show that EphA receptor signaling controls the topographic innervation of the acromiotrapezius. To test the role of EphA3 in motor axon guidance, we generated an EphA3 null mutant. Retrograde labeling studies in EphA3 ؊/؊ embryos and adults indicate that, contrary to our predictions, EphA3 is not necessary to direct motor axons to axial muscle targets. Our results also demonstrate that ephrin A5's ability to direct topographic innervation of the acromiotrapezius must be mediated through EphA receptors other than, or in addition to, EphA3.Processing sensory input and executing motor programs depends on the ordered connection of neurons that produce a spatially correct neural map of the body and environment. Such topographic maps develop when one set of neurons project onto their targets so that the order of the neurons is reflected in the order of their synaptic connections. Motor neurons are topographically organized in the spinal cord (13,20,28). First, motor neurons that innervate individual muscles form tightly clustered pools within the ventral horn of the spinal cord. Second, motor neurons at a given position in the rostrocaudal axis of the spinal cord tend to innervate skeletal muscles located proximate to that level. Third, in both the chick and the rodent, ventral motor neurons are readily subdivided into two discrete columns, the lateral motor column (LMC) and medial motor column (MMC) that, in turn, are subdivided into medial and lateral compartments, located at distinct positions within the axial and rostral-caudal planes of the spinal cord. Motor neurons within each column innervate a specific set of skeletal muscles; those within the MMC innervate axial and body wall musculature, while those within the LMC innervate limb musculature (25,29,42,43).