Development of chloroplast derived SSR markers for genus Allium and their characterization in the allies for genetic improvement of Alliums

Jayaswall, Kuldip; Sharma, Himanshu; Jayaswal, Deepanshu; Sagar, R.; Bhandawat, Abhishek; Kumar, Akash; Sharma, Isha; Chaturvedi, Pratibha; Manjunathagowda, Dalasanuru Chandregowda; Kumar, Deepesh; Mahajan, Vijay; Kumar, Sanjay; Singh, Major

doi:10.1016/j.sajb.2023.09.021

South African Journal of Botany

2023

DOI: 10.1016/j.sajb.2023.09.021

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Development of chloroplast derived SSR markers for genus Allium and their characterization in the allies for genetic improvement of Alliums

Kuldip Jayaswall,

Himanshu Sharma,

Deepanshu Jayaswal

et al.

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2024

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Cited by 2 publications

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Morphological and molecular diversity of some locally grown, underutilized and cultivated Allium species from India

Benke,

Mahajan,

Mokat

2024

Genet Resour Crop Evol

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Morphological and molecular diversity of some locally grown, underutilized and cultivated Allium species from India

Benke,

Mahajan,

Mokat

2024

Genet Resour Crop Evol

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Complete Plastid Genome Sequences of Four Salsoleae s.l. Species: Comparative and Phylogenetic Analyses

Almerekova,

Yermagambetova,

Osmonali

et al. 2024

Biomolecules

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The taxonomic classification of the genera Salsola L., Pyankovia Akhani and Roalson, and Xylosalsola Tzvelev within Chenopodiaceae Vent. (Amaranthaceae s.l.) remains controversial, with the precise number of species within these genera still unresolved. This study presents a comparative analysis of the complete plastid genomes of S. foliosa, S. tragus, P. affinis, and X. richteri species collected in Kazakhstan. The assembled plastid genomes varied in length, ranging from 151,177 bp to 152,969 bp for X. richteri and S. tragus. These genomes contained 133 genes, of which 114 were unique, including 80 protein-coding, 30 tRNA, and 4 rRNA genes. Thirteen regions, including ndhC-ndhD, rps16-psbK, petD, rpoC2, ndhA, petB, clpP, atpF, ycf3, accD, ndhF-ndhG, matK, and rpl20-rpl22, exhibited relatively high levels of nucleotide variation. A total of 987 SSRs were detected across the four analyzed plastid genomes, primarily located in the intergenic spacer regions. Additionally, 254 repeats were identified, including 92 tandem repeats, 88 forward repeats, 100 palindromic repeats, and only one reverse repeat. A phylogenetic analysis revealed clear clustering into four clusters corresponding to the Salsoleae and Caroxyloneae tribe clades. These nucleotide sequences obtained in this study represent a valuable resource for future phylogenetic analyses within the Salsoleae s.l. tribe.

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Development of chloroplast derived SSR markers for genus Allium and their characterization in the allies for genetic improvement of Alliums

Cited by 2 publications

References 64 publications

Morphological and molecular diversity of some locally grown, underutilized and cultivated Allium species from India

Morphological and molecular diversity of some locally grown, underutilized and cultivated Allium species from India

Complete Plastid Genome Sequences of Four Salsoleae s.l. Species: Comparative and Phylogenetic Analyses

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