Voriconazole is the first‐line antifungal choice in the treatment of invasive fungal infections (IFIs). Single nucleotide polymorphisms (SNPs) in drug‐metabolizing and transporter genes may affect voriconazole pharmacokinetics. This study aimed to determine the frequency of the
CYP2C19
rs4244285, rs4986893, rs72552267, and rs12248560,
CYP3A4
rs4646437,
ABCB1
rs1045642, and
FMO3
rs2266782 alleles and determine the association between these genetic variants and voriconazole concentrations in Thai patients with invasive fungal infections. The study comprised 177 Thai patients with IFIs in whom seven SNPs in
CYP2C19
,
CYP3A4
,
ABCB1,
and
FMO3
were genotyped using
Taq
Man real‐time polymerase chain reaction (RT‐PCR) 5´ nuclease assays, and voriconazole plasma concentrations were measured by high‐performance liquid chromatography‐tandem mass spectrometry (LC‐MS/MS). Of the 177 patients included, 31 were <12 years and 146 were ≥12 years. The
CYP2C19
allele frequencies were 0.29 for
*2
, 0.060 for
*3
, 0.003 for
*6
, and 0.008 for
*17
. The allele frequency of
CYP3A4
(rs4646437) was 0.26,
ABCB1
(rs1045642) was 0.36, and
FMO3
(rs2266782) was 0.16. The median voriconazole dose/weight was significantly lower in patients aged ≥12 years when compared to the patients aged <12 years (
P
< .001). Patients aged <12 years with
CYP2C19*1/*2
exhibited significantly higher median voriconazole plasma concentrations than those with the
CYP2C19*1/*1
(
P
= .038). However, there were no significant differences in median voriconazole plasma concentrations among the
CYP2C19
genotypes in the patients aged ≥12 years. There was a lack of association observed among the
CYP3A4, ABCB1, and
FMO3 genotypes on the plasma voriconazole concentrations in both groups of patients. Our findings indicate that voriconazole plasma concentrations are affected by the
CYP2C19*2
allele in patients aged <12 years but not in patients aged ≥12 years.