Greenhouse gas (GHG) emissions result from short-term perturbations of agricultural systems such as precipitation and fertilization events. We hypothesized that those agricultural systems with contrasting management histories may respond differently to application events of water and N fertilizer with respect to GHG emissions. Studies with long-term management histories consisting of no-tillage (NT) and conventional tillage (CT) were coupled with high temporal resolution, automated chambers that monitored N 2 O and CO 2 emissions for 22 h following treatments. Treatments applied to NT and CT were (a) control (no water or N additions), (b) simulated precipitation to achieve approximately 80% water-filled pore space, and (c) precipitation plus fertilizer additions of 150 kg N ha −1 as ammonium nitrate. Emissions of CO 2 increased with increase in moisture and temperature and decreased under fertilizer application. Water and nitrogen treatments in CT at the sites with 2 and 12-year history produced N 2 O fluxes greater than NT by 142 and 68%, respectively. The site with 10-year history of NT produced similar amounts of N 2 O from CT and NT treatments. The same treatments at the site with 31 year-long NT history, despite being one of the lowest among all sites, demonstrated 380% higher N 2 O fluxes from the NT than CT, which was likely due to higher levels of labile organic matter present in NT treatments. GHG emissions data regressed on measured soil C and N properties, fractionation, and mineralization data showed that N 2 O flux increased with reduction of acid-hydrolyzable N and increase of NH 4-N in soil, which suggested that N 2 O production in the short-term water and water and N additions events is mostly produced via nitrification process. This indicates that neither the length of NT treatment nor the fertilizer application rate define the rate of N 2 O emissions, but the soil N availability controlled by organic matter mineralization rate. The current study demonstrates the need for further research on the effects of the early stages of NT adoption as well as long-term NT on N 2 O spikes associated with artificial or natural rainfall events immediately following extended dry periods.