We analyzed mutations of 7 vitamin K-dependent protein and cytochrome P450 2C9 genes in 45 patients and investigated whether any contribute to the large interpatient variability in the warfarin dose-effect relationship. Total clearance and daily dose, INR and INR/Cp, were used as pharmacokinetic and pharmacodynamic indexes, respectively. Patients were grouped by genotype based on a single polymorphism and combinations of polymorphisms. Among the 30 sequence variants identified, CYP2C9*3, 165Thr 3 Met of the factor II gene, ؊402G 3 A, (37-bp repeat) n , and ؊746T 3 C of the factor VII gene, and (CAA repeat) n of the ␥-glutamyl carboxylase gene were selected as candidate polymorphisms. As the analysis of single polymorphisms implied, the highest INR/Cp mean values and the lowest warfarin maintenance doses were observed in patients homozygous for the 165Met, ؊402G, (37-bp repeat) 6 and ؊746T alleles. Multiple regression analysis revealed that warfarin sensitivity was independently associated with ؊402G 3 A, (CAA repeat) n , CYP2C9*3, and 165Thr 3 Met, which accounted for 50% of variance. These results suggest that part of the considerable interpatient variation is attributable to genetic variation, and the combined genotyping of CYP2C9 and certain vitamin K-dependent protein genes is useful for predicting anticoagulant responses.