Dissolved metabolites
serve as nutrition, energy, and chemical
signals for microbial systems. However, the full scope and magnitude
of these processes in marine systems are unknown, largely due to insufficient
methods, including poor extraction of small, polar compounds using
common solid-phase extraction resins. Here, we utilized pre-extraction
derivatization and ultrahigh performance liquid chromatography electrospray
ionization tandem mass spectrometry (UHPLC-ESI-MS/MS) to detect and
quantify targeted dissolved metabolites in seawater and saline culture
media. Metabolites were derivatized with benzoyl chloride by their
primary and secondary amine and alcohol functionalities and quantified
using stable isotope-labeled internal standards (SIL-ISs) produced
from 13C6-labeled benzoyl chloride. We optimized
derivatization, extraction, and sample preparation for field and culture
samples and evaluated matrix-derived biases. We have optimized this
quantitative method for 73 common metabolites, of which 50 cannot
be quantified without derivatization due to low extraction efficiencies.
Of the 73 metabolites, 66 were identified in either culture media
or seawater and 45 of those were quantified. This derivatization method
is sensitive (detection limits = pM to nM), rapid (∼5 min per
sample), and high throughput.