The variant surface glycoprotein (VSG) of African trypanosomes has a structural role in protecting other cell surface proteins from effector molecules of the mammalian immune system and also undergoes antigenic variation necessary for a persistent infection in a host. Here we have reported the solution structure of a VSG type 2 C-terminal domain from MITat1.2, completing the first structure of both domains of a VSG. The isolated C-terminal domain is a monomer in solution and forms a novel fold, which commences with a short ␣-helix followed by a single turn of 3 10 -helix and connected by a short loop to a small anti-parallel -sheet and then a longer ␣-helix at the C terminus. This compact domain is flanked by two unstructured regions. The structured part of the domain contains 42 residues, and the core comprises 2 disulfide bonds and 2 hydrophobic residues. These cysteines and hydrophobic residues are conserved in other VSGs, and we have modeled the structures of two further VSG C-terminal domains using the structure of MITat1.2. The models suggest that the overall structure of the core is conserved in the different VSGs but that the C-terminal ␣-helix is of variable length and depends on the presence of charged residues. The results provided evidence for a conserved tertiary structure for all the type 2 VSG C-terminal domains, indicated that VSG dimers form through interactions between N-terminal domains, and showed that the selection pressure for sequence variation within a conserved tertiary structure acts on the whole of the VSG molecule.African trypanosomes have evolved a complex system of antigenic variation that facilitates the long term survival of a population in a mammalian host (see Ref. 1 for a recent review). The entire cell surface is covered with a densely packed monolayer of a single polypeptide, the variant surface glycoprotein (VSG), 1 which protects other cell surface components from effectors of the host immune system. The VSG is also the mediator of antigenic variation. At any time, only a single VSG gene is expressed, and antigenic variation results from a low frequency, stochastic event that causes a switch to the expression of a different VSG gene. During the course of an infection, there are successive clonal expansions of trypanosomes, each expressing an antigenically novel VSG.In Trypanosoma brucei and the closely related species T. evansi and T. equiperdum, each VSG monomer has a molecular mass of 45-55 kDa and is made up of two or three domains (2, 3). The VSG N-terminal domain has 350 -400 residues, which are followed by one or two C-terminal domains of 30 -70 residues each. Less is known about T. congolense and T. vivax VSGs; they are somewhat smaller, 45-50 kDa, and have a single domain that is similar to the T. brucei VSG N-terminal domain (4). VSGs are dimeric (5, 6) and are attached to the plasma membrane via a covalent linkage from the C-terminal carboxyl group to a glycosylphosphatidylinositol anchor (7).VSGs that are successively expressed by an infecting population are ant...