“…At the same time, these equilibrium thermostats are increasingly being applied to simulations studying nonequilibrium processes including tribology [33,34], energy dissipation [35], crack propagation [15], heat transport [7,[36][37][38][39][40], and irradiation [41]. In some instances [15,33,41], the equilibrium thermostats are applied to all atoms of the system in order to impose a specific temperature, while in other studies [7,[34][35][36][37][38][39][40], the Nosé [28], Hoover [30], or Berendsen [42] thermostats were used to thermostat only certain regions of the systems, although, strictly speaking, they were only proven to work if applied to the whole system (and additionally the Berendsen thermostat is not truly canonical).…”