Detection of stress functional responses in bacterial populations under dry soil conditions show potential microbial mechanisms to resist drought conditions

Abstract

Climate change is predicted to have a negative effect on the grasslands of the United States and will be detrimental to the economy and environment. The changing precipitation levels would also have an effect on the structural and functional potential of associated soil microbiome communities, which in turn will regulate the health of the plants during stressful conditions. In this study, we applied metagenomics analyses to capture the responses of the bacterial populations under drier soil conditions. We collected soil from two sites (dry and wet) at the Konza Long-Term Ecological Research field station in Kansas, which had characteristic features of the native prairies. Soil drying resulted in a significant shift in the bacterial population at the community level. Following that, fifteen bacterial genomes were short-listed based on the availability in the public database, higher relative abundance in dry soils than in wet, and also according to their contributions in drier soil. The potential microbial mechanisms were elucidated when an in-depth analysis of the functional genes was performed. Translation elongation factor EF-Tu, thiamine biosynthesis protein, and catalase were identified as a part of the overall stress functional responses in the bacterial population in this study. We speculate that these identified bacterial populations are important for maintaining the health of the soil under dry conditions. Genes and/or pathways found in this study provide insights into microbial mechanisms that these bacterial populations might employ to resist challenging drought conditions.

Bacterial but not fungal rhizosphere communities differ among perennial grass ecotypes under abiotic environmental stress

“…The top seven bacterial taxa present in all the three ecotypes are Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi, Bacteroidetes, Verrucomicrobia, Planctomycetes, and one archaeal taxa, Thaumarchaeota (Figure 3, Supplementary Figure S1). Acidobacteria, Bacteroidetes, and Proteobacteria have ubiquitous presence in soil, thus explaining the importance of these phyla in all our samples (Chowdhury et al 2019;Sarkar et al 2020).…”