The Gram-negative myxobacterium Sorangium cellulosum So ce56 bears the largest bacterial genome published so far, coding for nearly 10,000 genes. Careful analysis of this genome data revealed that part of the genes coding for the very well conserved biosynthesis of lipopolysaccharides (LPS) are missing in this microbe. Biochemical analysis gave no evidence for the presence of LPS in the membranes of So ce56. By analyzing the lipid composition of its outer membrane sphingolipids were identified as the major lipid class, together with ornithine-containing lipids (OL) and ether lipids. A detailed analysis of these lipids resulted in the identification of more than 50 structural variants within these three classes, which possessed several interesting properties regarding to LPS replacement, mediators in myxobacterial differentiation, as well as potential bioactive properties. The sphingolipids with the basic structure C9-methyl-C 20 -sphingosine possessed as an unusual trait C9-methylation, which is common to fungi but highly uncommon to bacteria. Such sphingolipids have not been found in bacteria before, and they may have a function in myxobacterial development. The OL, also identified in myxobacteria for the first time, contained acyloxyacyl groups, which are also characteristic for LPS and might replace those in certain functions. Finally, the ether lipids may serve as biomarkers in myxobacterial development.Sorangium cellulosum So ce56 (So ce56) belongs to the quite heterogeneous group of myxobacteria, which represent Gramnegative soil ␦-proteobacteria that show a complex live cycle involving a cooperative and cellular morphogenesis (1). They have the ability to form fruiting bodies under nutrition starvation and move in swarms. Gliding movement on surfaces and the differentiation processes require complex cell-to-cell signaling and reminds the process of differentiation in eukaryotic Dictyostelium. In the last decades a number of pharmaceutical metabolites (2, 3) such as epothilone, a potent antitumor compound (4) have been isolated from this group of bacteria. Members of the genus Sorangium produce 46% of new bioactive secondary metabolites isolated from myxobacteria as yet (2).So ce56, as a member of the suborder Sorangiineae, exhibits the largest bacterial genome entirely published so far. The recent genome sequencing revealed a huge chromosome of 13,033,779 base pairs, coding for 9,367 proteins over all (5).Gram-negative bacteria possess characteristic cell envelopes comprising an inner (IM) 2 and an outer membrane (OM) and specific cell surface carbohydrates (6). One class of prominent Gram-negative surface carbohydrates are the lipopolysaccharides (LPS, endotoxin), which represent the main components of the outer leaflet of the OM. LPS have complex structures, usually consisting of three main components that are built by specific cellular machineries (7), i.e. the O-antigen that extends into the extracellular medium, the core region, and the lipid A that anchors the molecule in the OM and, in toxic LPS, r...