Detection and complete genome sequence analysis of human adenovirus in children with acute diarrhea in Yunnan, China, 2015–2021

Abstract

The aims of this study were to determine the distribution and prevalence of gastroenteritis caused by human adenovirus (HAdV) in children in Yunnan province, China, in 2015–2021 and to identify preventive measures that can be taken to reduce morbidity and mortality in children.HAdV is a significant agent of diarrhea in children, but limited data are available regarding the epidemiology and genetic diversity of HAdV in children with diarrhea in Yunnan province, China. A total of 1754 fecal samples were subjected to real-time RT-PCR to detect and quantify HAdV. Positive samples were further analyzed using next-generation sequencing (NGS), and epidemiological data were analyzed as well.1754 patients with diarrhea were enrolled, of which 1041 were male and 713 were female (M:F ratio: 1.46). Seventy-two stool samples out of 1754 (4.10%) were positive for HAdV. The detection rates of all age groups varied from 2.50–4.78%. The highest incidence of HAdV was observed in children under 2 years of age, especially in children 12–24 months-old. From 2015–2021, the annual detection rate ranged from 1.62–12.26%. HAdV was detected throughout the year, but with marked seasonality. Children were most likely to be positive for HAdV in June and November. We detected HAdV in 15.53% (16/103) of samples collected in June and in 8.19% (14/171) of those collected in November. The entire viral genome was successfully sequenced for 13 of the 72 HAdV-positive samples, and 76.92% (10/13) of these were classified as genotype F41 and 23.08% (3/13) were classified as genotype C2.ConclusionsIn Yunnan province, children of all ages are susceptible to HAdV infection, but there has been marked variation in the yearly prevalence. The highest rate of HAdV detection was in June, followed by November. Priority should be given to disease prevention over the development of targeted antiviral therapies, and effective vaccines for preventing HAdV diarrhea are needed. It is also important to establish a surveillance system to collect relevant clinical and epidemiological data quickly in order to assess the potential risk of HAdV infection in children and to identify epidemic strains for the development of effective vaccines.

Closing the Diagnostic Gap in Encephalitis and Acute Disseminated Encephalomyelitis through Digital Case Classification and Viral Metagenomics

“…Viral mNGS and confirmatory PCR testing in our cohort identified rare or novel potential links between pathogens to specific clinical entities ascertained using the VACC-Tool: three cases of ADEM could thus be linked to (a) saffold virus, (b) rotavirus, and (c) adenovirus detection [22] and one case of encephalitis was linked to sapovirus detection. All of these viral pathogens are frequently detected in patients with gastrointestinal disease, mainly presenting with acute diarrhea [33][34][35]. Diarrhea, however, was an exclusion criterion in our prospective digital surveillance and quality improvement program [13], meaning that the 100 clinical cases assessed in this study presented with confirmed CNS signs and symptoms in the confirmed absence of gastroenteritis.…”