Detecting Structure in Diffusion Tensor MR Images

Preterm births are rising in Canada and worldwide. As clinicians strive to identify preterm neonates at greatest risk of significant developmental or motor problems, accurate predictive tools are required. Infants at highest risk will be able to receive early developmental interventions, and will also enable clinicians to implement and evaluate new methods to improve outcomes. While severe white matter injury (WMI) is associated with adverse developmental outcome, more subtle injuries are difficult to identify and the association with later impairments remains unknown. Thus, our goal was to develop an automated method for detection and visualization of brain abnormalities in MR images acquired in very preterm born neonates. We have developed a technique to detect WMI in T1-weighted images acquired in 177 very preterm born infants (24–32 weeks gestation). Our approach uses a stochastic process that estimates the likelihood of intensity variations in nearby pixels; with small variations being more likely than large variations. We first detect the boundaries between normal and injured regions of the white matter. Following this we use a measure of pixel similarity to identify WMI regions. Our algorithm is able to detect WMI in all of the images in the ground truth dataset with some false positives in situations where the white matter region is not segmented accurately.

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Stochastic process for white matter injury detection in preterm neonates

Cheng

Miller

Duerden

et al. 2015

NeuroImage: Clinical

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A Machine Learning Approach to Growth Direction Finding for Automated Planting of Bulbous Plants

Booth

Sijbers

Beenhouwer

2020

Sci Rep

Self Cite

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In agricultural robotics, a unique challenge exists in the automated planting of bulbous plants: the estimation of the bulb’s growth direction. To date, no existing work addresses this challenge. Therefore, we propose the first robotic vision framework for the estimation of a plant bulb’s growth direction. The framework takes as input three x-ray images of the bulb and extracts shape, edge, and texture features from each image. These features are then fed into a machine learning regression algorithm in order to predict the 2D projection of the bulb’s growth direction. Using the x-ray system’s geometry, these 2D estimates are then mapped to the 3D world coordinate space, where a filtering on the estimate’s variance is used to determine whether the estimate is reliable. We applied our algorithm on 27,200 x-ray simulations from T. Apeldoorn bulbs on a standard desktop workstation. Results indicate that our machine learning framework is fast enough to meet industry standards (<0.1 seconds per bulb) while providing acceptable accuracy (e.g. error < 30° in 98.40% of cases using an artificial 3-layer neural network). The high success rates of the proposed framework indicate that it is worthwhile to proceed with the development and testing of a physical prototype of a robotic bulb planting system.

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Detecting Structure in Diffusion Tensor MR Images

Cited by 2 publications

References 20 publications

Stochastic process for white matter injury detection in preterm neonates

Stochastic process for white matter injury detection in preterm neonates

A Machine Learning Approach to Growth Direction Finding for Automated Planting of Bulbous Plants

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