Monopulse RADAR is the radar which detects the range of the target using a single transmitted signal. In this paper, using 9.41GHz X-band radar, the research for the phase comparison monopulse algorithm used in the marine environment is conducted. In addition, by applying the phase comparison monopulse algorithm, we calculate the RMSE for the various antenna spacings and the positions of the target. Based on that result, we compare the performance of the phase comparison monopulse algorithm in the uniform linear array with that in the non-uniform linear array. Finally, the differences in performance among the MUSIC algorithm, Bartlett method and the proposed phase comparison monopulse algorithm are analyzed.