Design and Synthesis of a Trifunctional Molecular System “Programmed” to Block Epidermal Growth Factor Receptor Tyrosine Kinase, Induce High Levels of DNA Damage, and Inhibit the DNA Repair Enzyme (Poly(ADP-ribose) Polymerase) in Prostate Cancer Cells
Abstract:Resistance to chemotherapy in advanced cancers can be mediated by different factors such as epidermal growth factor receptor (EGFR) overexpression and DNA repair enzymes. Therefore, current standards of care usually involve combinations of multiple treatments. Here, to reduce the adverse effects of multiple drug combinations and improve outcome, we proposed a single drug approach to block multiple overlapping effects that characterize chemoresistance. Thus, we designed a new linker that allows assembly of mult… Show more
“…Currently, most PROTACs focus on the degradation of a single target or several target subtypes within a protein family. Considering the advantages and success of multitargeting agents and bispecific antibodies, 234,235 designing a PROTAC that can degrade two or more different targets may achieve better therapeutic effects and expand the scope of PROTAC technology. To validate this hypothesis, Li's group designed dual‐targeting PROTACs that simultaneously degraded EGFR and PARP 48 .…”
Proteolysis targeting chimaeras (PROTACs) is a cutting edge and rapidly growing technique for new drug discovery and development. Currently, the largest challenge in the molecular design and drug development of PROTACs is efficient identification of potent and drug-like degraders. This review aims to comprehensively summarize and analyse state-ofthe-art methods and strategies in the design of PROTACs.We provide a detailed illustration of the general principles and tactics for designing potent PROTACs, highlight representative case studies, and discuss the advantages and limitations of these strategies. Particularly, structure-based rational PROTAC design and emerging new types of PROTACs (e.g., homo-PROTACs, multitargeting PROTACs, photo-control PROTACs and PROTAC-based conjugates) will be focused on.
“…Currently, most PROTACs focus on the degradation of a single target or several target subtypes within a protein family. Considering the advantages and success of multitargeting agents and bispecific antibodies, 234,235 designing a PROTAC that can degrade two or more different targets may achieve better therapeutic effects and expand the scope of PROTAC technology. To validate this hypothesis, Li's group designed dual‐targeting PROTACs that simultaneously degraded EGFR and PARP 48 .…”
Proteolysis targeting chimaeras (PROTACs) is a cutting edge and rapidly growing technique for new drug discovery and development. Currently, the largest challenge in the molecular design and drug development of PROTACs is efficient identification of potent and drug-like degraders. This review aims to comprehensively summarize and analyse state-ofthe-art methods and strategies in the design of PROTACs.We provide a detailed illustration of the general principles and tactics for designing potent PROTACs, highlight representative case studies, and discuss the advantages and limitations of these strategies. Particularly, structure-based rational PROTAC design and emerging new types of PROTACs (e.g., homo-PROTACs, multitargeting PROTACs, photo-control PROTACs and PROTAC-based conjugates) will be focused on.
“…They have gradually become an alternative to combination therapy or the use of mixtures. 6,7 Proteolysis targeting chimera (PROTAC) is a kind of bifunctional small molecule, in which the target protein ligand and the E3 ubiquitin ligase ligand are linked together through a linker to form a triplet compound. 8 Compared with traditional small molecule inhibitors, PROTAC has several advantages.…”
Section: ■ Introductionmentioning
confidence: 99%
“…[11][12] The inhibition of EGFR leads to the down-regulation of key players in BER and sensitizes cell response to alkylating agents and ionizing radiation. [13][14] inhibition of both EGFR and PARP may produce a synergistic effect. [3] In order to verify the concept of dual protac shown above, we designed the first round of dual protac molecules by merging EGFR inhibitors and PARP inhibitors with E3 ligase ligand in one novel star shape molecule, and evaluated their capability to degrade two independent targets at the cellular level.…”
Inspired by the success of dual targeting drugs, especially bispecific antibodies, we propose to combine the concept of protac and dual targeting to design and synthesize dual protac molecules with the function of degrading two completely different types of targets simultaneously. A library of novel dual targeting protac molecules have been rationally designed and prepared. A convergent synthetic strategy has been utilized to achieve high synthetic efficiency. These dual protac structures are characterized by using trifunctional natural amino acids as star-type core linkers to connect two independent inhibitors and E3 ligands together. In this study, gefitinib, olaparib, and CRBN or VHL E3 ligand were used as substrates to synthesize novel dual protacs. They successfully degraded both EGFR and PARP simultaneously in cancer cells. Being the first successful example of dual protacs, this technique will greatly widen the range of application of the protac method and open up a new field for drug discovery. File list (2) download file view on ChemRxiv dual_protac manuscript.pdf (1.02 MiB) download file view on ChemRxiv Supplementary Information.pdf (4.08 MiB)
“…Thus, in recent years, strategies designed to overcome resistance mediated by compensatory signaling have involved the use of a multi-targeted approach [4,5]. Within this context, over the past decade, we developed a novel approach termed "combi-targeting" that sought to design agents designated as "combi-molecules" capable of inducing tandem blockade of two divergent biological targets (e.g., EGFR, PARP, MEK, and DNA) [6][7][8][9][10][11][12][13][14][15][16]. Further work on the concept led to the synthesis of molecules rationally designed to target two oncogenic tyrosine kinases involved in adverse signaling [17,18].…”
The median-effect principle proposed by Chou and Talalay is the most effective approach to parameterize interactions between several agents in combination. However, this method cannot be used to evaluate the effectiveness of equimolar drug combinations, which are comparative references for dual-targeting molecular design. Here, using data acquired through the development of “combi-molecules” blocking two kinases (e.g., EGFR-c-Src and EGFR-c-Met), we established potency indices for equimolar and dual-targeted inhibitors. If the fold difference (κ) between the IC50 of the two individual kinase inhibitors was >6, the IC50 of their equimolar combination resembled that of the more potent inhibitor. Hence, the “combi-targeting” of the two kinases was considered “imbalanced” and the combination ineffective. However, if κ ≤ 6, the IC50 of the combination fell below that of each individual drug and the combi-targeting was considered “balanced” and the combination effective. We also showed that combi-molecules should be compared with equimolar combinations only under balanced conditions and propose a new parameter Ω for validating their effectiveness. A multi-targeted drug is effective if Ω < 1, where Ω is defined as the IC50 of the drug divided by that of the corresponding equimolar combination. Our study provides a methodology to determine the in vitro potency of equimolar two-drug combinations as well as combi-/hybrid molecules inhibiting two different kinase targets.
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