Cochliomyia Townsend includes several abundant and one of the most broadly distributed, blow flies in the Americas, and is of significant economic and forensic importance. For decades, Cochliomyia
hominivorax (Coquerel) and Cochliomyia
macellaria (Fabricius) have received attention as livestock parasites and primary indicator species in forensic entomology. However, Cochliomyia
minima Shannon and Cochliomyia
aldrichi Del Ponte have only been subject to basic taxonomy and faunistic studies. Here we present the first complete phylogeny of Cochliomyia including numerous specimens per species, collected from 13 localities in the Caribbean. Four genes, the mitochondrial COI and the nuclear EF-1α, 28S rRNA, and ITS2, were analyzed. While we found some differences among gene trees, a concatenated gene matrix recovered a robustly supported monophyletic Cochliomyia with Compsomyiops Townsend as its sister group and recovered the monophyly of Cochliomyia
hominivorax, Cochliomyia
macellaria and Cochliomyia
minima. Our results support a close relationship between Cochliomyia
minima and Cochliomyia
aldrichi. However, we found Cochliomyia
aldrichi containing Cochliomyia
minima, indicating recent speciation, or issues with the taxonomy of the group. We provide basic information on habitat preference, distribution and feeding habits of Cochliomyia
minima and Cochliomyia
aldrichi that will be useful for future forensic studies in the Caribbean.