Sheep with Johne's disease develop epithelioid macrophage microgranulomas, specific to Mycobacterium avium subsp. paratuberculosis (Map) infection, in the terminal ileum, mesenteric lymph nodes, and organs distant to the alimentary tract such as the liver. The objectives of this study were to determine whether liver pathology was present in ewes affected by Map and whether liver cores provide adequate tissue for this potential diagnostic marker. One hundred and twenty-six adult, low body condition ewes were euthanized, necropsied, and underwent simulated liver biopsy. Ileal lesions typical of Map were found in 60 ewes. Hepatic epithelioid microgranulomas were observed in all ewes with Type 3b (n ¼ 40) and 82% (n ¼ 11) with Type 3c ileal lesions. None were found in ewes unaffected by Map or with Type 1, 2, or 3a ileal lesions. Liver biopsy core samples provided adequate tissue for histopathology with a sensitivity and specificity of 96% (95% confidence interval [CI], 0.87-0.99) and 100% (95% CI, 0.95-1), respectively for detection of types 3b and 3c ileal lesions.Keywords diagnostic test, ELISA, hepatic granuloma, hepatic epithelioid macrophage, histopathology, Johne's disease, liver biopsy, Mycobacterium avium subsp. paratuberculosis (Map), New Zealand, serology, sheep, sensitivity, specificityThe diagnosis of clinical Johne's disease (JD) in sheep is often made postmortem with examination of gross lesions including cording or lymphangitis of the ileal serosal lymphatics, lymphadenitis, and enlargement of the mesenteric lymph nodes and corrugated granulomatous thickening of the ileal mucosa with confirmation made histopathologically. In live sheep, available diagnostic tests include fecal culture, Ziehl Neelsen stained fecal smears identifying acid fast organisms (AFO), ELISA, Map-specific polymerase chain reaction (PCR), identification of Map specific peptides, and measuring the mRNA expression of pro-inflammatory cytokines such as gamma interferon. Sheep with clinical JD have advanced ileal lesions with Map cultured from organs distant to the alimentary tract such as the peripheral lymph nodes, skeletal muscle, and liver as a result of Map bacteraemia and systemic infection. 2,4,8,9 The portal blood system facilitates Map infection of the liver, which is an organ readily accessed using routine biopsy in the live animal. Liver biopsy histopathology may provide an opportunity to identify JD in live sheep without surgery. The objectives of this study were to determine whether sheep with ileal lesions typical of Map have concurrent hepatic epithelioid macrophage microgranulomas (HEM), compare the sensitivity and specificity of liver histopathology with ELISA serology for diagnosis of ewes affected by Map, defined as those with Type 3b and 3c ileal lesions 7 (Table 1), and determine whether liver biopsy samples provide enough tissue for use as a diagnostic test.Adult, Romney composite mixed breed and mixed age ewes (>3 years old) from 7 North Island New Zealand farms, with a history of clinical JD and flock...