18Enteroendocrine cells (EECs) survey the gut luminal environment and co-ordinate hormonal, 19 immune and neuronal responses to it. They exhibit well characterised physiological roles ranging from 20 the control of local gut function to whole body metabolism, but little is known regarding the regulatory 21 networks controlling their differentiation, especially in human gut.
22The small molecule Isoxazole-9 (ISX-9) stimulates neuronal and pancreatic beta-cell 23 differentiation, both closely related to EEC differentiation. We used ISX-9 as a tool to explore EEC 24 specification in mouse and human intestinal organoids. ISX-9 increased the number of neurogenin3 25 (Ngn3) positive endocrine progenitor cells and upregulated NeuroD1 and Pax4, transcription factors 26 which play roles in mouse EEC specification. Single cell analysis revealed induction of Pax4 expression 27 in a developmentally late Ngn3 + population of cells and potentiation of genes associated with 28 progenitors biased towards serotonin-producing enterochromaffin (EC) cells. This coincided with 29 enrichment of organoids with functional EC cells which was partly dependent on stimulation of 30 calcium signalling in a population of cells residing outside the crypt base. Inducible Pax4 31 overexpression, in ileal organoids, uncovered its importance as a component of early human 32 endocrine specification and highlighted the potential existence of two major endocrine lineages, the 1 early appearing enterochromaffin lineage and the later developing peptidergic lineage which contains 2 classical gut hormone cell types. 3 Our data provide proof-of-concept for the controlled manipulation of specific endocrine 4 lineages with small molecules, whilst also shedding new light on human EEC differentiation and its 5 similarity to mouse. Given their diverse roles, understanding endocrine lineage plasticity and its 6 control could have multiple therapeutic implications. 7 8 10 every 4-5 days and is composed of 5 terminally differentiated cell types; the absorptive enterocytes 11 and the secretory Paneth, goblet, tuft and enteroendocrine cells (Gehart and Clevers, 2019). These 12 cells are constitutively generated by cycling Lgr5 + crypt stem cells and together they orchestrate the 13 epithelium's major functions, nutrient absorption and defence. Despite representing only 1% of the 14 epithelium, the enteroendocrine cells (EECs) constitute the largest hormone producing tissue and 15 have been described as the gut's sentinels. They sample the luminal, circulating and local tissue 16 environments and co-ordinate an appropriate response from the epithelium, immune and nervous 17 systems (Gribble and Reimann, 2016). For example, they play a key role in controlling the response to 18 a meal, fine tuning physiology to ensure optimal fuel absorption, use and storage (Sam et al., 2012). 19 Gut hormones exhibit actions ranging from the local control of gut motility, absorption and secretion, 20 to the regulation of whole-body metabolism (Melvin et al., 2016). Whilst there i...