DERA in Flow: Synthesis of a Statin Side Chain Precursor in Continuous Flow Employing Deoxyribose-5-Phosphate Aldolase Immobilized in Alginate-Luffa Matrix
Abstract:Statins, cholesterol-lowering drugs used for the treatment of coronary artery disease (CAD), are among the top 10 prescribed drugs worldwide. However, the synthesis of their characteristic side chain containing two chiral hydroxyl groups can be challenging. The application of deoxyribose-5-phosphate aldolase (DERA) is currently one of the most promising routes for the synthesis of this side chain. Herein, we describe the development of a continuous flow process for the biosynthesis of a side chain precursor. D… Show more
“…Immobilisation has also given promising results, including applications in flow. 94,95 DERA is employed industrially. [96][97][98] For several years already the synthesis of the statin side chain is based on an intriguing double aldol reaction.…”
The many waves of biocatalysis have arisen to solve long-standing synthetic challenges. From industrially applied hydrolases to enzymes catalysing selective C–C-bond formation, biocatalysis enables new tools to access a plethora of compounds.
“…Immobilisation has also given promising results, including applications in flow. 94,95 DERA is employed industrially. [96][97][98] For several years already the synthesis of the statin side chain is based on an intriguing double aldol reaction.…”
The many waves of biocatalysis have arisen to solve long-standing synthetic challenges. From industrially applied hydrolases to enzymes catalysing selective C–C-bond formation, biocatalysis enables new tools to access a plethora of compounds.
“…8). 72 Fig. 8 Continuous EcDERA-C47M catalysed aldol reaction for the synthesis of (3R,5S)-6-chloro-2,4,6-trideoxyhexapyranoside in aqueous medium.…”
Section: Biotransformations In Aqueous Systems As Reaction Mediummentioning
The merger of enzyme immobilisation and flow chemistry has attracted the attention of the scientific community during the last years. Immobilisation enhances enzyme stability and enables recycling, flow chemistry allows...
“…A continuous-flow process was also developed by Grabner et al for the synthesis of statin side-chain precursor. In this process, freeze-dried whole E. coli cells expressing the C47M DERA mutant were immobilized using alginate-luffa matrix (Grabner et al 2020).…”
Section: Other Means To Improve Dera Properties For Application Purposesmentioning
Deoxyribose-5-phosphate aldolases (DERAs, EC 4.1.2.4) are acetaldehyde-dependent, Class I aldolases catalyzing in nature a reversible aldol reaction between an acetaldehyde donor (C2 compound) and glyceraldehyde-3-phosphate acceptor (C3 compound, C3P) to generate deoxyribose-5-phosphate (C5 compound, DR5P). DERA enzymes have been found to accept also other types of aldehydes as their donor, and in particular as acceptor molecules. Consequently, DERA enzymes can be applied in C–C bond formation reactions to produce novel compounds, thus offering a versatile biocatalytic alternative for synthesis. DERA enzymes, found in all kingdoms of life, share a common TIM barrel fold despite the low overall sequence identity. The catalytic mechanism is well-studied and involves formation of a covalent enzyme-substrate intermediate. A number of protein engineering studies to optimize substrate specificity, enzyme efficiency, and stability of DERA aldolases have been published. These have employed various engineering strategies including structure-based design, directed evolution, and recently also machine learning–guided protein engineering. For application purposes, enzyme immobilization and usage of whole cell catalysis are preferred methods as they improve the overall performance of the biocatalytic processes, including often also the stability of the enzyme. Besides single-step enzymatic reactions, DERA aldolases have also been applied in multi-enzyme cascade reactions both in vitro and in vivo. The DERA-based applications range from synthesis of commodity chemicals and flavours to more complicated and high-value pharmaceutical compounds.
Key points
• DERA aldolases are versatile biocatalysts able to make new C–C bonds.
• Synthetic utility of DERAs has been improved by protein engineering approaches.
• Computational methods are expected to speed up the future DERA engineering efforts.
Graphical abstract
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