The Escherichia coli BglF protein, a permease of the phosphoenolpyruvate-dependent phosphotransferase system, catalyzes transport and phosphorylation of -glucosides. In addition, BglF regulates bgl operon expression by controlling the activity of the transcriptional regulator BglG via reversible phosphorylation. BglF is composed of three domains; one is hydrophobic, which presumably forms the sugar translocation channel. We studied the topology of this domain by Cysreplacement mutagenesis and chemical modification by thiol reagents. Most Cys substitutions were well tolerated, as demonstrated by the ability of the mutant proteins to catalyze BglF activities. Our results suggest that the membrane domain contains eight transmembrane helices and an alleged cytoplasmic loop that contains two additional helices. The latter region forms a dynamic structure, as evidenced by the alternation of residues near its ends between faced-in and faced-out states. We suggest that this region, together with the two transmembrane helices encompassing it, forms the sugar translocation channel. BglF periplasmic loops are close to the membrane, the first being a reentrant loop. This is the first systematic topological study carried out with an intact phosphotransferase system permease and the first demonstration of a reentrant loop in this group of proteins.The Escherichia coli BglF protein (EII bgl ), an enzyme II of the phosphoenolpyruvate-dependent carbohydrate phosphotransferase system (PTS), 1 catalyzes concomitant transport and phosphorylation of -glucosides across the cytoplasmic membrane (1). In addition to its ability to phosphorylate its sugar substrate, BglF phosphorylates the transcriptional regulator BglG in the absence of -glucosides and dephosphorylates P-BglG upon addition of -glucosides to the growth medium (2, 3). By controlling the phosphorylation state of BglG, BglF controls the dimeric state of BglG and, thus, its ability to bind RNA and antiterminate transcription of the bgl operon (4).BglF dimerizes spontaneously in the membrane, and its dimeric form can catalyze all the above mentioned activities (5). Several other enzymes II of PTS were shown to regulate activity of transcription factors. Two representative examples are SacX, a sucrose permease from Bacillus subtilis, which regulates the activity of the BglG homologue SacY by reversible phosphorylation (6, 7), and PstG, a glucose permease from E. coli, which regulates the activity of the global regulator Mlc by membrane sequestration (8, 9).The phosphate flux in PTS starts with a phosphoryl group, donated by phosphoenolpyruvate, which is passed through the general PTS proteins, enzyme I, and HPr, to the various sugar-specific permeases. Like many other PTS permeases, BglF is composed of three domains: the hydrophilic A and B domains (IIA bgl and IIB bgl ) and the hydrophobic C domain (IIC bgl ) (reviewed in Refs. 10 -12). The domains of BglF are covalently linked to one another in the order BCA. The A domain is phosphorylated by HPr; the phosphate is then t...